Analysis of interatomic Contacts of Structural Units in PDB entry:
8IWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IWS entry

There is 1 chain in PDB entry 8IWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16ILE 905
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 8IWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed alpha
Helix 2
AA2
A
30 38Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
70 77Right-handed alpha
Helix 5
AA5
A
78 80Right-handed 310
Helix 6
AA6
A
81 96Right-handed alpha
Helix 7
AA7
A
100 128Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
239 249Right-handed alpha
Helix 10
AB1
A
256 288Right-handed alpha
Helix 11
AB2
A
290 306Right-handed alpha
Helix 12
AB3
A
309 328Right-handed alpha
Helix 13
AB4
A
335 340Right-handed 310
Helix 14
AB5
A
398 411Right-handed alpha
Helix 15
AB6
A
424 437Right-handed alpha
Helix 16
AB7
A
441 444Right-handed 310
Helix 17
AB8
A
482 487Right-handed alpha
Helix 18
AB9
A
503 520Right-handed alpha
Helix 19
AC1
A
552 562Right-handed alpha
Helix 20
AC2
A
573 584Right-handed alpha
Helix 21
AC3
A
595 602Right-handed alpha
Helix 22
AC4
A
603 608Right-handed alpha
Helix 23
AC5
A
621 635Right-handed alpha
Helix 24
AC6
A
645 654Right-handed alpha
Helix 25
AC7
A
666 673Right-handed alpha
Helix 26
AC8
A
683 723Right-handed alpha
Helix 27
AC9
A
730 742Right-handed alpha
Helix 28
AD1
A
743 750Right-handed alpha
Helix 29
AD2
A
772 798Right-handed alpha
Helix 30
AD3
A
804 826Right-handed alpha
Helix 31
AD4
A
842 860Right-handed alpha
Helix 32
AD5
A
861 869Right-handed alpha
Helix 33
AD6
A
874 885Right-handed alpha
Helix 34
AD7
A
886 905Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8IWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
141 143anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
222 234anti-parallel
Strand 5
A
172 184anti-parallel
Strand 6
A
195 196anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
141 143anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
222 234anti-parallel
Strand 5
A
172 184anti-parallel
Strand 6
A
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
675 677anti-parallel
Strand 3
A
659 661parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
565 566parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
385 388anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
361 367anti-parallel
Strand 5
A
536 545anti-parallel
Strand 6
A
523 530anti-parallel
Strand 7
A
476 481anti-parallel
Strand 8
A
460 467anti-parallel
Strand 9
A
446 452anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
385 388anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
361 367anti-parallel
Strand 5
A
536 545anti-parallel
Strand 6
A
490 495parallel
Strand 7
A
498 501anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 569first strand
Strand 2
A
616 617parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il