Analysis of interatomic Contacts of Structural Units in PDB entry:
8IWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IWW entry

There is 1 chain in PDB entry 8IWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17VAL 909
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8IWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed alpha
Helix 2
AA2
A
30 39Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
70 78Right-handed alpha
Helix 5
AA5
A
81 97Right-handed alpha
Helix 6
AA6
A
100 130Right-handed alpha
Helix 7
AA7
A
239 249Right-handed alpha
Helix 8
AA8
A
256 286Right-handed alpha
Helix 9
AA9
A
290 306Right-handed alpha
Helix 10
AB1
A
309 328Right-handed alpha
Helix 11
AB2
A
335 341Right-handed alpha
Helix 12
AB3
A
398 411Right-handed alpha
Helix 13
AB4
A
424 437Right-handed alpha
Helix 14
AB5
A
439 444Right-handed 310
Helix 15
AB6
A
482 487Right-handed alpha
Helix 16
AB7
A
503 520Right-handed alpha
Helix 17
AB8
A
551 561Right-handed alpha
Helix 18
AB9
A
573 584Right-handed alpha
Helix 19
AC1
A
595 601Right-handed alpha
Helix 20
AC2
A
603 608Right-handed alpha
Helix 21
AC3
A
621 633Right-handed alpha
Helix 22
AC4
A
648 655Right-handed alpha
Helix 23
AC5
A
667 672Right-handed alpha
Helix 24
AC6
A
682 721Right-handed alpha
Helix 25
AC7
A
730 742Right-handed alpha
Helix 26
AC8
A
743 748Right-handed alpha
Helix 27
AC9
A
757 761Right-handed 310
Helix 28
AD1
A
772 798Right-handed alpha
Helix 29
AD2
A
804 826Right-handed alpha
Helix 30
AD3
A
842 860Right-handed alpha
Helix 31
AD4
A
861 866Right-handed alpha
Helix 32
AD5
A
874 909Right-handed alpha
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There are 8 sheets in PDB entry 8IWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
222 234anti-parallel
Strand 5
A
172 184anti-parallel
Strand 6
A
195 196anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
222 234anti-parallel
Strand 5
A
172 184anti-parallel
Strand 6
A
216 217anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 566first strand
Strand 2
A
346 347parallel
Strand 3
A
639 641parallel
Strand 4
A
657 658parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
536 545anti-parallel
Strand 3
A
522 530anti-parallel
Strand 4
A
476 481anti-parallel
Strand 5
A
460 467anti-parallel
Strand 6
A
446 452anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
364 367anti-parallel
Strand 5
A
536 545anti-parallel
Strand 6
A
490 495parallel
Strand 7
A
498 501anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 417first strand
Strand 2
A
420 422anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 594first strand
Strand 2
A
614 617parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 661first strand
Strand 2
A
676 677parallel
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