Analysis of interatomic Contacts of Structural Units in PDB entry:
8IXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IXM entry

There are 2 chains in PDB entry 8IXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6PRO 314
B
 GLN 5PRO 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8IXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
85 96Right-handed alpha
Helix 5
AA5
A
111 117Right-handed alpha
Helix 6
AA6
A
118 120Right-handed 310
Helix 7
AA7
A
161 179Right-handed alpha
Helix 8
AA8
A
188 210Right-handed alpha
Helix 9
AA9
A
213 220Right-handed alpha
Helix 10
AB1
A
220 241Right-handed alpha
Helix 11
AB2
A
248 259Right-handed alpha
Helix 12
AB3
A
265 274Right-handed alpha
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
283 293Right-handed alpha
Helix 15
AB6
A
297 313Right-handed alpha
Helix 16
AB7
B
14 27Right-handed alpha
Helix 17
AB8
B
38 46Right-handed alpha
Helix 18
AB9
B
67 71Right-handed 310
Helix 19
AC1
B
85 96Right-handed alpha
Helix 20
AC2
B
111 117Right-handed alpha
Helix 21
AC3
B
118 120Right-handed 310
Helix 22
AC4
B
161 179Right-handed alpha
Helix 23
AC5
B
188 210Right-handed alpha
Helix 24
AC6
B
213 220Right-handed alpha
Helix 25
AC7
B
220 241Right-handed alpha
Helix 26
AC8
B
248 259Right-handed alpha
Helix 27
AC9
B
265 273Right-handed alpha
Helix 28
AD1
B
278 283Right-handed alpha
Helix 29
AD2
B
283 293Right-handed alpha
Helix 30
AD3
B
297 313Right-handed alpha
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There are 4 sheets in PDB entry 8IXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
142 157parallel
Strand 4
A
125 137anti-parallel
Strand 5
A
97 105parallel
Strand 6
A
74 79parallel
Strand 7
A
7 11parallel
Strand 8
A
30 34parallel
Strand 9
A
64 65parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
142 157parallel
Strand 4
A
183 185parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
142 157parallel
Strand 4
B
125 139anti-parallel
Strand 5
B
97 105parallel
Strand 6
B
74 79parallel
Strand 7
B
7 11parallel
Strand 8
B
30 34parallel
Strand 9
B
63 65parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
142 157parallel
Strand 4
B
183 185parallel
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