Analysis of interatomic Contacts of Structural Units in PDB entry:
8IY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IY8 entry

There are 2 chains in PDB entry 8IY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ILE 275
B
 HIS -2ILE 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8IY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 50Right-handed alpha
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
89 107Right-handed alpha
Helix 5
AA5
A
119 132Right-handed alpha
Helix 6
AA6
A
173 184Right-handed alpha
Helix 7
AA7
A
208 223Right-handed alpha
Helix 8
AA8
A
264 272Right-handed alpha
Helix 9
AA9
B
42 50Right-handed alpha
Helix 10
AB1
B
52 61Right-handed alpha
Helix 11
AB2
B
80 85Right-handed alpha
Helix 12
AB3
B
89 107Right-handed alpha
Helix 13
AB4
B
119 132Right-handed alpha
Helix 14
AB5
B
173 183Right-handed alpha
Helix 15
AB6
B
208 223Right-handed alpha
Helix 16
AB7
B
264 272Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8IY8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
32 36parallel
Strand 5
A
113 118parallel
Strand 6
A
138 142parallel
Strand 7
A
194 200parallel
Strand 8
A
249 254parallel
Strand 9
A
238 243anti-parallel
Strand 10
A
226 230anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
63 68anti-parallel
Strand 4
B
32 36parallel
Strand 5
B
113 118parallel
Strand 6
B
138 142parallel
Strand 7
B
194 200parallel
Strand 8
B
249 254parallel
Strand 9
B
238 243anti-parallel
Strand 10
B
226 230anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il