Analysis of interatomic Contacts of Structural Units in PDB entry:
8IYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IYF entry

There are 2 chains in PDB entry 8IYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3THR 481
B
 GLY 3THR 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8IYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 40Right-handed alpha
Helix 2
AA2
A
56 66Right-handed alpha
Helix 3
AA3
A
75 77Right-handed 310
Helix 4
AA4
A
88 100Right-handed alpha
Helix 5
AA5
A
103 109Right-handed alpha
Helix 6
AA6
A
121 146Right-handed alpha
Helix 7
AA7
A
159 162Right-handed 310
Helix 8
AA8
A
163 172Right-handed alpha
Helix 9
AA9
A
187 192Right-handed alpha
Helix 10
AB1
A
195 207Right-handed alpha
Helix 11
AB2
A
216 231Right-handed alpha
Helix 12
AB3
A
274 280Right-handed alpha
Helix 13
AB4
A
292 295Right-handed 310
Helix 14
AB5
A
296 310Right-handed alpha
Helix 15
AB6
A
329 351Right-handed alpha
Helix 16
AB7
A
362 373Right-handed alpha
Helix 17
AB8
A
387 396Right-handed alpha
Helix 18
AB9
A
410 415Right-handed alpha
Helix 19
AC1
A
416 418Right-handed 310
Helix 20
AC2
A
425 439Right-handed alpha
Helix 21
AC3
A
440 456Right-handed alpha
Helix 22
AC4
A
459 481Right-handed alpha
Helix 23
AC5
B
34 40Right-handed alpha
Helix 24
AC6
B
56 66Right-handed alpha
Helix 25
AC7
B
75 77Right-handed 310
Helix 26
AC8
B
88 99Right-handed alpha
Helix 27
AC9
B
103 109Right-handed alpha
Helix 28
AD1
B
121 146Right-handed alpha
Helix 29
AD2
B
159 162Right-handed 310
Helix 30
AD3
B
163 172Right-handed alpha
Helix 31
AD4
B
187 192Right-handed alpha
Helix 32
AD5
B
195 207Right-handed alpha
Helix 33
AD6
B
216 231Right-handed alpha
Helix 34
AD7
B
274 280Right-handed alpha
Helix 35
AD8
B
292 295Right-handed 310
Helix 36
AD9
B
296 310Right-handed alpha
Helix 37
AE1
B
329 351Right-handed alpha
Helix 38
AE2
B
362 373Right-handed alpha
Helix 39
AE3
B
387 396Right-handed alpha
Helix 40
AE4
B
410 415Right-handed alpha
Helix 41
AE5
B
416 418Right-handed 310
Helix 42
AE6
B
425 439Right-handed alpha
Helix 43
AE7
B
440 456Right-handed alpha
Helix 44
AE8
B
459 481Right-handed alpha
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There are 6 sheets in PDB entry 8IYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
45 53parallel
Strand 4
A
4 9parallel
Strand 5
A
152 157parallel
Strand 6
A
177 180parallel
Strand 7
A
211 214parallel
Strand 8
A
248 254parallel
Strand 9
A
242 245anti-parallel
Strand 10
A
235 237anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
26 30anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
316 323parallel
Strand 3
A
283 290parallel
Strand 4
A
375 378parallel
Strand 5
A
401 405parallel
Strand 6
A
419 421parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
45 53parallel
Strand 4
B
4 9parallel
Strand 5
B
152 157parallel
Strand 6
B
177 180parallel
Strand 7
B
211 214parallel
Strand 8
B
248 254parallel
Strand 9
B
242 245anti-parallel
Strand 10
B
235 237anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
26 30anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 359first strand
Strand 2
B
316 323parallel
Strand 3
B
283 290parallel
Strand 4
B
375 378parallel
Strand 5
B
401 405parallel
Strand 6
B
419 421parallel
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