Analysis of interatomic Contacts of Structural Units in PDB entry:
8J03

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J03 entry

There are 8 chains in PDB entry 8J03 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 70	ARG 595
D	ARG 70	ARG 595
E	THR 6	ALA 148
G	ARG 70	ARG 595
H	THR 6	ALA 148
I	ARG 70	ARG 595
J	THR 6	ALA 148
F	THR 6	ALA 148

There are 90 helices in PDB entry 8J03. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	86	Right-handed alpha
Helix 2	AA2	A	91	114	Right-handed alpha
Helix 3	AA3	A	118	148	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	155	165	Right-handed alpha
Helix 6	AA6	A	166	184	Right-handed alpha
Helix 7	AA7	A	196	210	Right-handed alpha
Helix 8	AA8	A	215	228	Right-handed alpha
Helix 9	AA9	A	228	255	Right-handed alpha
Helix 10	AB1	A	263	276	Right-handed alpha
Helix 11	AB2	A	287	327	Right-handed alpha
Helix 12	AB3	A	332	348	Right-handed alpha
Helix 13	AB4	A	536	560	Right-handed alpha
Helix 14	AB5	A	564	595	Right-handed alpha
Helix 15	AB6	D	71	86	Right-handed alpha
Helix 16	AB7	D	91	114	Right-handed alpha
Helix 17	AB8	D	118	148	Right-handed alpha
Helix 18	AB9	D	149	151	Right-handed 310
Helix 19	AC1	D	155	165	Right-handed alpha
Helix 20	AC2	D	166	184	Right-handed alpha
Helix 21	AC3	D	196	210	Right-handed alpha
Helix 22	AC4	D	215	228	Right-handed alpha
Helix 23	AC5	D	228	255	Right-handed alpha
Helix 24	AC6	D	263	276	Right-handed alpha
Helix 25	AC7	D	287	327	Right-handed alpha
Helix 26	AC8	D	332	348	Right-handed alpha
Helix 27	AC9	D	536	560	Right-handed alpha
Helix 28	AD1	D	564	595	Right-handed alpha
Helix 29	AD2	E	7	21	Right-handed alpha
Helix 30	AD3	E	29	41	Right-handed alpha
Helix 31	AD4	E	45	57	Right-handed alpha
Helix 32	AD5	E	65	75	Right-handed alpha
Helix 33	AD6	E	82	94	Right-handed alpha
Helix 34	AD7	E	102	111	Right-handed alpha
Helix 35	AD8	E	118	130	Right-handed alpha
Helix 36	AD9	E	139	148	Right-handed alpha
Helix 37	AE1	G	71	86	Right-handed alpha
Helix 38	AE2	G	91	114	Right-handed alpha
Helix 39	AE3	G	118	148	Right-handed alpha
Helix 40	AE4	G	149	151	Right-handed 310
Helix 41	AE5	G	155	165	Right-handed alpha
Helix 42	AE6	G	166	184	Right-handed alpha
Helix 43	AE7	G	196	210	Right-handed alpha
Helix 44	AE8	G	215	228	Right-handed alpha
Helix 45	AE9	G	228	255	Right-handed alpha
Helix 46	AF1	G	258	262	Right-handed 310
Helix 47	AF2	G	263	276	Right-handed alpha
Helix 48	AF3	G	287	327	Right-handed alpha
Helix 49	AF4	G	332	348	Right-handed alpha
Helix 50	AF5	G	536	560	Right-handed alpha
Helix 51	AF6	G	564	595	Right-handed alpha
Helix 52	AF7	H	7	21	Right-handed alpha
Helix 53	AF8	H	29	41	Right-handed alpha
Helix 54	AF9	H	45	57	Right-handed alpha
Helix 55	AG1	H	65	74	Right-handed alpha
Helix 56	AG2	H	82	94	Right-handed alpha
Helix 57	AG3	H	102	111	Right-handed alpha
Helix 58	AG4	H	118	130	Right-handed alpha
Helix 59	AG5	H	139	148	Right-handed alpha
Helix 60	AG6	I	71	86	Right-handed alpha
Helix 61	AG7	I	91	114	Right-handed alpha
Helix 62	AG8	I	118	148	Right-handed alpha
Helix 63	AG9	I	149	151	Right-handed 310
Helix 64	AH1	I	155	165	Right-handed alpha
Helix 65	AH2	I	166	184	Right-handed alpha
Helix 66	AH3	I	196	210	Right-handed alpha
Helix 67	AH4	I	215	228	Right-handed alpha
Helix 68	AH5	I	228	255	Right-handed alpha
Helix 69	AH6	I	258	262	Right-handed 310
Helix 70	AH7	I	263	276	Right-handed alpha
Helix 71	AH8	I	287	327	Right-handed alpha
Helix 72	AH9	I	332	348	Right-handed alpha
Helix 73	AI1	I	536	560	Right-handed alpha
Helix 74	AI2	I	564	595	Right-handed alpha
Helix 75	AI3	J	7	21	Right-handed alpha
Helix 76	AI4	J	29	40	Right-handed alpha
Helix 77	AI5	J	45	57	Right-handed alpha
Helix 78	AI6	J	65	74	Right-handed alpha
Helix 79	AI7	J	82	94	Right-handed alpha
Helix 80	AI8	J	102	111	Right-handed alpha
Helix 81	AI9	J	118	130	Right-handed alpha
Helix 82	AJ1	J	139	148	Right-handed alpha
Helix 83	AJ2	F	7	21	Right-handed alpha
Helix 84	AJ3	F	29	41	Right-handed alpha
Helix 85	AJ4	F	45	57	Right-handed alpha
Helix 86	AJ5	F	65	74	Right-handed alpha
Helix 87	AJ6	F	82	94	Right-handed alpha
Helix 88	AJ7	F	102	111	Right-handed alpha
Helix 89	AJ8	F	118	130	Right-handed alpha
Helix 90	AJ9	F	139	148	Right-handed alpha

There are 4 sheets in PDB entry 8J03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	137	138	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	101	first strand
Strand 2	H	137	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	101	first strand
Strand 2	J	137	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	137	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J03

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J03