Analysis of interatomic Contacts of Structural Units in PDB entry:
8J09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J09 entry

There are 2 chains in PDB entry 8J09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 154PRO 420
B
 MET 1LEU 650
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8J09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
156 171Right-handed alpha
Helix 2
AA2
A
175 182Right-handed alpha
Helix 3
AA3
A
182 196Right-handed alpha
Helix 4
AA4
A
200 210Right-handed alpha
Helix 5
AA5
A
214 223Right-handed alpha
Helix 6
AA6
A
224 229Right-handed 310
Helix 7
AA7
A
233 248Right-handed alpha
Helix 8
AA8
A
256 285Right-handed alpha
Helix 9
AA9
A
287 292Right-handed 310
Helix 10
AB1
A
293 298Right-handed alpha
Helix 11
AB2
A
298 313Right-handed alpha
Helix 12
AB3
A
338 360Right-handed alpha
Helix 13
AB4
A
372 381Right-handed alpha
Helix 14
AB5
A
389 397Right-handed alpha
Helix 15
AB6
A
397 403Right-handed alpha
Helix 16
AB7
A
406 419Right-handed alpha
Helix 17
AB8
B
4 6Right-handed 310
Helix 18
AB9
B
7 20Right-handed alpha
Helix 19
AC1
B
35 52Right-handed alpha
Helix 20
AC2
B
63 73Right-handed alpha
Helix 21
AC3
B
91 96Right-handed alpha
Helix 22
AC4
B
130 136Right-handed alpha
Helix 23
AC5
B
146 152Right-handed alpha
Helix 24
AC6
B
152 160Right-handed alpha
Helix 25
AC7
B
232 242Right-handed alpha
Helix 26
AC8
B
250 262Right-handed alpha
Helix 27
AC9
B
266 279Right-handed alpha
Helix 28
AD1
B
284 302Right-handed alpha
Helix 29
AD2
B
328 332Right-handed 310
Helix 30
AD3
B
333 340Right-handed alpha
Helix 31
AD4
B
341 349Right-handed alpha
Helix 32
AD5
B
353 366Right-handed alpha
Helix 33
AD6
B
369 374Right-handed alpha
Helix 34
AD7
B
381 396Right-handed alpha
Helix 35
AD8
B
397 400Right-handed 310
Helix 36
AD9
B
401 405Right-handed 310
Helix 37
AE1
B
421 435Right-handed alpha
Helix 38
AE2
B
464 483Right-handed alpha
Helix 39
AE3
B
488 516Right-handed alpha
Helix 40
AE4
B
541 556Right-handed alpha
Helix 41
AE5
B
604 614Right-handed alpha
Helix 42
AE6
B
636 645Right-handed alpha
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There are 4 sheets in PDB entry 8J09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
140 143parallel
Strand 3
B
119 123parallel
Strand 4
B
80 84parallel
Strand 5
B
27 32parallel
Strand 6
B
58 61parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
246 247anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 322first strand
Strand 2
B
407 413anti-parallel
Strand 3
B
419 420anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 521first strand
Strand 2
B
526 530anti-parallel
Strand 3
B
567 573parallel
Strand 4
B
578 584anti-parallel
Strand 5
B
630 633anti-parallel
Strand 6
B
620 621anti-parallel
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