Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J0D entry

There are 4 chains in PDB entry 8J0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
3
 TRP 31ILE 250
4
 GLU 33TYR 195
5
 GLU 33GLY 192
6
 PHE 32GLN 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8J0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
3
82 111Right-handed alpha
Helix 2
AA2
3
130 135Right-handed alpha
Helix 3
AA3
3
139 164Right-handed alpha
Helix 4
AA4
3
189 222Right-handed alpha
Helix 5
AA5
3
224 230Right-handed alpha
Helix 6
AA6
3
231 233Right-handed 310
Helix 7
AA7
4
55 80Right-handed alpha
Helix 8
AA8
4
81 85Right-handed 310
Helix 9
AA9
4
107 112Right-handed alpha
Helix 10
AB1
4
113 130Right-handed alpha
Helix 11
AB2
4
143 178Right-handed alpha
Helix 12
AB3
4
191 195Right-handed 310
Helix 13
AB4
5
49 53Right-handed 310
Helix 14
AB5
5
55 86Right-handed alpha
Helix 15
AB6
5
105 109Right-handed 310
Helix 16
AB7
5
116 134Right-handed alpha
Helix 17
AB8
5
162 192Right-handed alpha
Helix 18
AB9
6
56 86Right-handed alpha
Helix 19
AC1
6
89 93Right-handed 310
Helix 20
AC2
6
99 103Right-handed 310
Helix 21
AC3
6
107 111Right-handed 310
Helix 22
AC4
6
114 131Right-handed alpha
Helix 23
AC5
6
146 150Right-handed 310
Helix 24
AC6
6
159 191Right-handed alpha
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There are 3 sheets in PDB entry 8J0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
32 33first strand
Strand 2
3
42 43anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
91 93first strand
Strand 2
4
96 98anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
92 94first strand
Strand 2
5
97 98anti-parallel
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