Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J0E entry

There are 4 chains in PDB entry 8J0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 TYR 72PRO 86
A
 ARG 69LYS 85
B
 ASP 5TRP 287
E
 ARG 71LYS 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8J0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
72 78Right-handed alpha
Helix 2
AA2
F
79 85Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
79 85Right-handed alpha
Helix 5
AA5
B
6 14Right-handed 310
Helix 6
AA6
B
22 27Right-handed alpha
Helix 7
AA7
B
28 32Right-handed 310
Helix 8
AA8
B
34 51Right-handed alpha
Helix 9
AA9
B
61 78Right-handed alpha
Helix 10
AB1
B
79 85Right-handed alpha
Helix 11
AB2
B
91 114Right-handed alpha
Helix 12
AB3
B
125 130Right-handed 310
Helix 13
AB4
B
132 147Right-handed alpha
Helix 14
AB5
B
175 188Right-handed alpha
Helix 15
AB6
B
238 252Right-handed alpha
Helix 16
AB7
B
265 272Right-handed alpha
Helix 17
AB8
B
281 285Right-handed 310
Helix 18
AB9
E
72 78Right-handed alpha
Helix 19
AC1
E
79 84Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8J0E.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 123first strand
Strand 2
B
150 155parallel
Strand 3
B
54 58parallel
Strand 4
B
16 21parallel
Strand 5
B
191 196parallel
Strand 6
B
256 260parallel
Strand 7
B
278 280anti-parallel
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