Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J0F entry

There are 8 chains in PDB entry 8J0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ILE 4PRO 289
F
 TYR 72PRO 86
A
 ILE 4PRO 289
E
 TYR 72PRO 86
B
 ILE 4PRO 289
G
 TYR 72PRO 86
D
 ILE 4PRO 289
H
 TYR 72PRO 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8J0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
5 13Right-handed 310
Helix 2
AA2
C
22 27Right-handed alpha
Helix 3
AA3
C
28 32Right-handed 310
Helix 4
AA4
C
34 51Right-handed alpha
Helix 5
AA5
C
61 78Right-handed alpha
Helix 6
AA6
C
79 83Right-handed 310
Helix 7
AA7
C
91 114Right-handed alpha
Helix 8
AA8
C
124 129Right-handed 310
Helix 9
AA9
C
130 147Right-handed alpha
Helix 10
AB1
C
175 187Right-handed alpha
Helix 11
AB2
C
237 253Right-handed alpha
Helix 12
AB3
C
264 272Right-handed alpha
Helix 13
AB4
C
281 286Right-handed 310
Helix 14
AB5
F
73 77Right-handed alpha
Helix 15
AB6
F
79 85Right-handed alpha
Helix 16
AB7
A
5 13Right-handed 310
Helix 17
AB8
A
22 27Right-handed alpha
Helix 18
AB9
A
28 32Right-handed 310
Helix 19
AC1
A
34 51Right-handed alpha
Helix 20
AC2
A
61 78Right-handed alpha
Helix 21
AC3
A
79 83Right-handed 310
Helix 22
AC4
A
91 114Right-handed alpha
Helix 23
AC5
A
124 129Right-handed 310
Helix 24
AC6
A
130 147Right-handed alpha
Helix 25
AC7
A
175 187Right-handed alpha
Helix 26
AC8
A
237 253Right-handed alpha
Helix 27
AC9
A
264 272Right-handed alpha
Helix 28
AD1
A
281 286Right-handed 310
Helix 29
AD2
E
73 77Right-handed alpha
Helix 30
AD3
E
79 85Right-handed alpha
Helix 31
AD4
B
5 13Right-handed 310
Helix 32
AD5
B
22 27Right-handed alpha
Helix 33
AD6
B
28 32Right-handed 310
Helix 34
AD7
B
34 51Right-handed alpha
Helix 35
AD8
B
61 78Right-handed alpha
Helix 36
AD9
B
79 83Right-handed 310
Helix 37
AE1
B
91 114Right-handed alpha
Helix 38
AE2
B
124 129Right-handed 310
Helix 39
AE3
B
130 147Right-handed alpha
Helix 40
AE4
B
175 187Right-handed alpha
Helix 41
AE5
B
237 253Right-handed alpha
Helix 42
AE6
B
264 272Right-handed alpha
Helix 43
AE7
B
281 286Right-handed 310
Helix 44
AE8
G
73 77Right-handed alpha
Helix 45
AE9
G
79 85Right-handed alpha
Helix 46
AF1
D
5 13Right-handed 310
Helix 47
AF2
D
22 27Right-handed alpha
Helix 48
AF3
D
28 32Right-handed 310
Helix 49
AF4
D
34 51Right-handed alpha
Helix 50
AF5
D
61 78Right-handed alpha
Helix 51
AF6
D
79 83Right-handed 310
Helix 52
AF7
D
91 114Right-handed alpha
Helix 53
AF8
D
124 129Right-handed 310
Helix 54
AF9
D
130 147Right-handed alpha
Helix 55
AG1
D
175 187Right-handed alpha
Helix 56
AG2
D
237 253Right-handed alpha
Helix 57
AG3
D
264 272Right-handed alpha
Helix 58
AG4
D
281 286Right-handed 310
Helix 59
AG5
H
73 77Right-handed alpha
Helix 60
AG6
H
79 85Right-handed alpha
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There are 4 sheets in PDB entry 8J0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 123first strand
Strand 2
C
149 155parallel
Strand 3
C
54 58parallel
Strand 4
C
16 21parallel
Strand 5
C
191 196parallel
Strand 6
C
256 260parallel
Strand 7
C
278 280anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 123first strand
Strand 2
A
149 155parallel
Strand 3
A
54 58parallel
Strand 4
A
16 21parallel
Strand 5
A
191 196parallel
Strand 6
A
256 260parallel
Strand 7
A
278 280anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 123first strand
Strand 2
B
149 155parallel
Strand 3
B
54 58parallel
Strand 4
B
16 21parallel
Strand 5
B
191 196parallel
Strand 6
B
256 260parallel
Strand 7
B
278 280anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 123first strand
Strand 2
D
149 155parallel
Strand 3
D
54 58parallel
Strand 4
D
16 21parallel
Strand 5
D
191 196parallel
Strand 6
D
256 260parallel
Strand 7
D
278 280anti-parallel
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