Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J0L entry

There are 2 chains in PDB entry 8J0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 206LYS 411
B
 ASN 206LYS 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8J0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 239Right-handed alpha
Helix 2
AA2
A
245 253Right-handed alpha
Helix 3
AA3
A
265 273Right-handed alpha
Helix 4
AA4
A
288 292Right-handed 310
Helix 5
AA5
A
293 311Right-handed alpha
Helix 6
AA6
A
313 324Right-handed alpha
Helix 7
AA7
A
327 329Right-handed 310
Helix 8
AA8
A
330 354Right-handed alpha
Helix 9
AA9
A
369 384Right-handed alpha
Helix 10
AB1
A
386 411Right-handed alpha
Helix 11
AB2
B
231 239Right-handed alpha
Helix 12
AB3
B
245 253Right-handed alpha
Helix 13
AB4
B
261 272Right-handed alpha
Helix 14
AB5
B
287 292Right-handed 310
Helix 15
AB6
B
293 311Right-handed alpha
Helix 16
AB7
B
313 324Right-handed alpha
Helix 17
AB8
B
327 329Right-handed 310
Helix 18
AB9
B
330 354Right-handed alpha
Helix 19
AC1
B
369 384Right-handed alpha
Helix 20
AC2
B
386 411Right-handed alpha
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There are 2 sheets in PDB entry 8J0L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
226 230anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
227 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il