Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J0N entry

There are 9 chains in PDB entry 8J0N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 22	ARG 993
B	ALA 2	SER 297
C	PRO 4	PHE 261
D	GLY 12	LEU 183
E	ALA 2	SER 104
F	PRO 11	TYR 110
G	ASP 43	ARG 152
H	PRO 2	CYS 210
J	GLY 50	MET 207

There are 62 helices in PDB entry 8J0N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	463	474	Right-handed alpha
Helix 2	AA2	A	479	510	Right-handed alpha
Helix 3	AA3	A	521	525	Right-handed alpha
Helix 4	AA4	A	655	666	Right-handed alpha
Helix 5	AA5	A	887	894	Right-handed alpha
Helix 6	AA6	A	961	993	Right-handed alpha
Helix 7	AA7	B	3	9	Right-handed alpha
Helix 8	AA8	B	11	26	Right-handed alpha
Helix 9	AA9	B	29	44	Right-handed alpha
Helix 10	AB1	B	48	67	Right-handed alpha
Helix 11	AB2	B	69	83	Right-handed alpha
Helix 12	AB3	B	86	101	Right-handed alpha
Helix 13	AB4	B	102	117	Right-handed alpha
Helix 14	AB5	B	120	135	Right-handed alpha
Helix 15	AB6	B	136	152	Right-handed alpha
Helix 16	AB7	B	154	168	Right-handed alpha
Helix 17	AB8	B	170	185	Right-handed alpha
Helix 18	AB9	B	188	203	Right-handed alpha
Helix 19	AC1	B	204	223	Right-handed alpha
Helix 20	AC2	B	226	242	Right-handed alpha
Helix 21	AC3	B	246	270	Right-handed alpha
Helix 22	AC4	B	277	297	Right-handed alpha
Helix 23	AC5	C	12	39	Right-handed alpha
Helix 24	AC6	C	45	64	Right-handed alpha
Helix 25	AC7	C	69	82	Right-handed alpha
Helix 26	AC8	C	86	91	Right-handed alpha
Helix 27	AC9	C	117	132	Right-handed alpha
Helix 28	AD1	C	145	147	Right-handed 310
Helix 29	AD2	C	148	153	Right-handed alpha
Helix 30	AD3	C	167	179	Right-handed alpha
Helix 31	AD4	C	179	187	Right-handed alpha
Helix 32	AD5	C	193	209	Right-handed alpha
Helix 33	AD6	C	213	228	Right-handed alpha
Helix 34	AD7	C	237	242	Right-handed alpha
Helix 35	AD8	C	246	257	Right-handed alpha
Helix 36	AD9	D	12	16	Right-handed 310
Helix 37	AE1	D	61	73	Right-handed alpha
Helix 38	AE2	D	74	79	Right-handed alpha
Helix 39	AE3	D	80	91	Right-handed alpha
Helix 40	AE4	D	95	113	Right-handed alpha
Helix 41	AE5	D	115	124	Right-handed alpha
Helix 42	AE6	D	126	155	Right-handed alpha
Helix 43	AE7	D	160	166	Right-handed alpha
Helix 44	AE8	E	3	34	Right-handed alpha
Helix 45	AE9	E	42	64	Right-handed alpha
Helix 46	AF1	E	80	86	Right-handed alpha
Helix 47	AF2	E	95	101	Right-handed alpha
Helix 48	AF3	F	15	45	Right-handed alpha
Helix 49	AF4	F	47	71	Right-handed alpha
Helix 50	AF5	F	73	78	Right-handed alpha
Helix 51	AF6	F	81	86	Right-handed alpha
Helix 52	AF7	F	90	108	Right-handed alpha
Helix 53	AF8	G	57	63	Right-handed alpha
Helix 54	AF9	H	7	21	Right-handed alpha
Helix 55	AG1	H	67	83	Right-handed alpha
Helix 56	AG2	H	105	119	Right-handed alpha
Helix 57	AG3	H	163	177	Right-handed alpha
Helix 58	AG4	H	185	192	Right-handed alpha
Helix 59	AG5	H	199	210	Right-handed alpha
Helix 60	AG6	J	91	104	Right-handed alpha
Helix 61	AG7	J	133	140	Right-handed alpha
Helix 62	AG8	J	197	207	Right-handed alpha

There are 26 sheets in PDB entry 8J0N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	941	947	anti-parallel
Strand 3	A	933	939	anti-parallel
Strand 4	A	919	926	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	62	67	anti-parallel
Strand 4	A	77	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	117	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	135	first strand
Strand 2	A	140	146	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	161	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	209	216	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	256	260	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	290	294	anti-parallel
Strand 3	A	301	305	anti-parallel
Strand 4	A	310	315	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	326	first strand
Strand 2	A	331	337	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	391	394	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	363	365	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	412	first strand
Strand 2	A	416	423	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	441	445	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	458	first strand
Strand 2	A	535	540	anti-parallel
Strand 3	A	544	549	anti-parallel
Strand 4	A	555	560	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	574	first strand
Strand 2	A	587	592	anti-parallel
Strand 3	A	599	604	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	633	first strand
Strand 2	A	637	643	anti-parallel
Strand 3	A	649	651	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	699	first strand
Strand 2	A	680	686	anti-parallel
Strand 3	A	670	674	anti-parallel
Strand 4	D	177	180	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	711	first strand
Strand 2	A	741	747	anti-parallel
Strand 3	A	757	762	anti-parallel
Strand 4	A	769	775	anti-parallel
Strand 5	J	191	192	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	725	first strand
Strand 2	A	731	733	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	786	first strand
Strand 2	A	790	797	anti-parallel
Strand 3	A	802	811	anti-parallel
Strand 4	A	832	839	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	821	822	first strand
Strand 2	D	172	173	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	847	849	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	870	874	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	165	166	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	89	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	138	141	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	77	first strand
Strand 2	G	66	68	anti-parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	108	112	anti-parallel
Strand 5	G	118	122	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	51	63	parallel
Strand 3	H	25	32	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	123	127	parallel
Strand 6	H	141	146	anti-parallel
Strand 7	H	152	154	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	87	first strand
Strand 2	J	68	77	anti-parallel
Strand 3	J	51	59	anti-parallel
Strand 4	J	108	114	anti-parallel
Strand 5	J	126	132	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	162	first strand
Strand 2	J	144	150	anti-parallel
Strand 3	J	183	188	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J0N

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0N