Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J0Q entry

There are 2 chains in PDB entry 8J0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 224LEU 433
B
 ASN 225ASN 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8J0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 258Right-handed alpha
Helix 2
AA2
A
264 272Right-handed alpha
Helix 3
AA3
A
279 291Right-handed alpha
Helix 4
AA4
A
306 311Right-handed 310
Helix 5
AA5
A
312 331Right-handed alpha
Helix 6
AA6
A
332 343Right-handed alpha
Helix 7
AA7
A
348 374Right-handed alpha
Helix 8
AA8
A
388 403Right-handed alpha
Helix 9
AA9
A
405 432Right-handed alpha
Helix 10
AB1
B
250 258Right-handed alpha
Helix 11
AB2
B
264 273Right-handed alpha
Helix 12
AB3
B
284 289Right-handed alpha
Helix 13
AB4
B
306 311Right-handed 310
Helix 14
AB5
B
312 331Right-handed alpha
Helix 15
AB6
B
332 345Right-handed alpha
Helix 16
AB7
B
349 372Right-handed alpha
Helix 17
AB8
B
388 403Right-handed alpha
Helix 18
AB9
B
405 433Right-handed alpha
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There are 2 sheets in PDB entry 8J0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
245 249anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 233first strand
Strand 2
B
246 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il