Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J0T entry

There are 20 chains in PDB entry 8J0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	PRO 521
B	THR 5	ALA 513
C	THR 5	PRO 545
D	ASP 18	LEU 486
E	ASP 18	LEU 486
F	ASP 18	LEU 486
G	ALA 3	ALA 302
H	ALA 2	ILE 120
1	MET 1	LYS 81
2	MET 1	LYS 81
3	MET 1	LYS 81
4	MET 1	LYS 81
5	MET 1	LYS 81
6	MET 1	LYS 81
7	MET 1	LYS 81
8	MET 1	LYS 81
9	MET 1	LYS 81
a	GLN 9	LEU 245
b	SER 21	LEU 164
d	MET 1	PRO 445

There are188 helices in PDB entry 8J0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	21	Right-handed alpha
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	153	160	Right-handed alpha
Helix 5	AA5	A	177	188	Right-handed alpha
Helix 6	AA6	A	189	195	Right-handed alpha
Helix 7	AA7	A	212	226	Right-handed alpha
Helix 8	AA8	A	227	230	Right-handed 310
Helix 9	AA9	A	242	256	Right-handed alpha
Helix 10	AB1	A	257	263	Right-handed alpha
Helix 11	AB2	A	273	288	Right-handed alpha
Helix 12	AB3	A	293	297	Right-handed 310
Helix 13	AB4	A	300	310	Right-handed alpha
Helix 14	AB5	A	316	320	Right-handed 310
Helix 15	AB6	A	339	349	Right-handed alpha
Helix 16	AB7	A	356	362	Right-handed alpha
Helix 17	AB8	A	377	382	Right-handed 310
Helix 18	AB9	A	383	390	Right-handed alpha
Helix 19	AC1	A	392	404	Right-handed alpha
Helix 20	AC2	A	405	413	Right-handed 310
Helix 21	AC3	A	414	431	Right-handed alpha
Helix 22	AC4	A	440	454	Right-handed alpha
Helix 23	AC5	A	460	462	Right-handed 310
Helix 24	AC6	A	463	478	Right-handed alpha
Helix 25	AC7	A	479	490	Right-handed alpha
Helix 26	AC8	A	493	511	Right-handed alpha
Helix 27	AC9	B	10	19	Right-handed alpha
Helix 28	AD1	B	81	85	Right-handed 310
Helix 29	AD2	B	103	107	Right-handed 310
Helix 30	AD3	B	138	142	Right-handed 310
Helix 31	AD4	B	153	160	Right-handed alpha
Helix 32	AD5	B	177	188	Right-handed alpha
Helix 33	AD6	B	189	196	Right-handed alpha
Helix 34	AD7	B	212	226	Right-handed alpha
Helix 35	AD8	B	242	262	Right-handed alpha
Helix 36	AD9	B	273	288	Right-handed alpha
Helix 37	AE1	B	293	297	Right-handed 310
Helix 38	AE2	B	300	310	Right-handed alpha
Helix 39	AE3	B	316	320	Right-handed 310
Helix 40	AE4	B	339	349	Right-handed alpha
Helix 41	AE5	B	356	362	Right-handed alpha
Helix 42	AE6	B	377	381	Right-handed 310
Helix 43	AE7	B	383	403	Right-handed alpha
Helix 44	AE8	B	418	432	Right-handed alpha
Helix 45	AE9	B	440	453	Right-handed alpha
Helix 46	AF1	B	463	478	Right-handed alpha
Helix 47	AF2	B	480	490	Right-handed alpha
Helix 48	AF3	B	493	510	Right-handed alpha
Helix 49	AF4	C	12	21	Right-handed alpha
Helix 50	AF5	C	103	107	Right-handed 310
Helix 51	AF6	C	138	142	Right-handed 310
Helix 52	AF7	C	153	160	Right-handed alpha
Helix 53	AF8	C	177	188	Right-handed alpha
Helix 54	AF9	C	189	196	Right-handed alpha
Helix 55	AG1	C	212	226	Right-handed alpha
Helix 56	AG2	C	242	262	Right-handed alpha
Helix 57	AG3	C	273	288	Right-handed alpha
Helix 58	AG4	C	293	297	Right-handed 310
Helix 59	AG5	C	300	310	Right-handed alpha
Helix 60	AG6	C	339	347	Right-handed alpha
Helix 61	AG7	C	356	362	Right-handed alpha
Helix 62	AG8	C	377	382	Right-handed 310
Helix 63	AG9	C	383	390	Right-handed alpha
Helix 64	AH1	C	392	407	Right-handed alpha
Helix 65	AH2	C	414	432	Right-handed alpha
Helix 66	AH3	C	440	453	Right-handed alpha
Helix 67	AH4	C	460	462	Right-handed 310
Helix 68	AH5	C	463	478	Right-handed alpha
Helix 69	AH6	C	479	490	Right-handed alpha
Helix 70	AH7	C	493	509	Right-handed alpha
Helix 71	AH8	D	137	141	Right-handed 310
Helix 72	AH9	D	152	159	Right-handed alpha
Helix 73	AI1	D	176	189	Right-handed alpha
Helix 74	AI2	D	204	218	Right-handed alpha
Helix 75	AI3	D	220	222	Right-handed 310
Helix 76	AI4	D	234	255	Right-handed alpha
Helix 77	AI5	D	267	277	Right-handed alpha
Helix 78	AI6	D	293	303	Right-handed alpha
Helix 79	AI7	D	322	325	Right-handed 310
Helix 80	AI8	D	328	335	Right-handed alpha
Helix 81	AI9	D	336	338	Right-handed 310
Helix 82	AJ1	D	345	350	Right-handed alpha
Helix 83	AJ2	D	373	401	Right-handed alpha
Helix 84	AJ3	D	402	405	Right-handed 310
Helix 85	AJ4	D	406	424	Right-handed alpha
Helix 86	AJ5	D	427	429	Right-handed 310
Helix 87	AJ6	D	430	435	Right-handed alpha
Helix 88	AJ7	D	442	456	Right-handed alpha
Helix 89	AJ8	D	471	481	Right-handed alpha
Helix 90	AJ9	E	102	106	Right-handed 310
Helix 91	AK1	E	137	141	Right-handed 310
Helix 92	AK2	E	152	159	Right-handed alpha
Helix 93	AK3	E	176	191	Right-handed alpha
Helix 94	AK4	E	204	218	Right-handed alpha
Helix 95	AK5	E	234	255	Right-handed alpha
Helix 96	AK6	E	266	281	Right-handed alpha
Helix 97	AK7	E	293	303	Right-handed alpha
Helix 98	AK8	E	321	325	Right-handed 310
Helix 99	AK9	E	328	335	Right-handed alpha
Helix 100	AL1	E	345	351	Right-handed alpha
Helix 101	AL2	E	368	373	Right-handed alpha
Helix 102	AL3	E	373	401	Right-handed alpha
Helix 103	AL4	E	402	405	Right-handed 310
Helix 104	AL5	E	406	423	Right-handed alpha
Helix 105	AL6	E	427	429	Right-handed 310
Helix 106	AL7	E	430	435	Right-handed alpha
Helix 107	AL8	E	442	456	Right-handed alpha
Helix 108	AL9	E	462	467	Right-handed 310
Helix 109	AM1	E	471	481	Right-handed alpha
Helix 110	AM2	F	102	106	Right-handed 310
Helix 111	AM3	F	137	141	Right-handed 310
Helix 112	AM4	F	152	159	Right-handed alpha
Helix 113	AM5	F	176	190	Right-handed alpha
Helix 114	AM6	F	204	218	Right-handed alpha
Helix 115	AM7	F	220	222	Right-handed 310
Helix 116	AM8	F	234	255	Right-handed alpha
Helix 117	AM9	F	266	281	Right-handed alpha
Helix 118	AN1	F	293	305	Right-handed alpha
Helix 119	AN2	F	322	325	Right-handed 310
Helix 120	AN3	F	328	335	Right-handed alpha
Helix 121	AN4	F	336	338	Right-handed 310
Helix 122	AN5	F	345	351	Right-handed alpha
Helix 123	AN6	F	373	400	Right-handed alpha
Helix 124	AN7	F	401	405	Right-handed 310
Helix 125	AN8	F	406	423	Right-handed alpha
Helix 126	AN9	F	427	429	Right-handed 310
Helix 127	AO1	F	430	435	Right-handed alpha
Helix 128	AO2	F	442	456	Right-handed alpha
Helix 129	AO3	F	471	482	Right-handed alpha
Helix 130	AO4	G	4	59	Right-handed alpha
Helix 131	AO5	G	65	69	Right-handed 310
Helix 132	AO6	G	91	109	Right-handed alpha
Helix 133	AO7	G	120	130	Right-handed alpha
Helix 134	AO8	G	146	163	Right-handed alpha
Helix 135	AO9	G	225	302	Right-handed alpha
Helix 136	AP1	H	88	90	Right-handed 310
Helix 137	AP2	H	91	100	Right-handed alpha
Helix 138	AP3	H	103	118	Right-handed alpha
Helix 139	AP4	1	2	42	Right-handed alpha
Helix 140	AP5	1	45	76	Right-handed alpha
Helix 141	AP6	2	2	42	Right-handed alpha
Helix 142	AP7	2	44	76	Right-handed alpha
Helix 143	AP8	3	2	42	Right-handed alpha
Helix 144	AP9	3	45	76	Right-handed alpha
Helix 145	AQ1	4	2	42	Right-handed alpha
Helix 146	AQ2	4	45	76	Right-handed alpha
Helix 147	AQ3	5	2	42	Right-handed alpha
Helix 148	AQ4	5	45	76	Right-handed alpha
Helix 149	AQ5	6	2	42	Right-handed alpha
Helix 150	AQ6	6	45	76	Right-handed alpha
Helix 151	AQ7	7	2	42	Right-handed alpha
Helix 152	AQ8	7	45	76	Right-handed alpha
Helix 153	AQ9	8	2	42	Right-handed alpha
Helix 154	AR1	8	45	76	Right-handed alpha
Helix 155	AR2	9	2	42	Right-handed alpha
Helix 156	AR3	9	45	76	Right-handed alpha
Helix 157	AR4	a	30	51	Right-handed alpha
Helix 158	AR5	a	58	79	Right-handed alpha
Helix 159	AR6	a	80	85	Right-handed 310
Helix 160	AR7	a	86	104	Right-handed alpha
Helix 161	AR8	a	105	107	Right-handed 310
Helix 162	AR9	a	128	152	Right-handed alpha
Helix 163	AS1	a	168	201	Right-handed alpha
Helix 164	AS2	a	202	204	Right-handed 310
Helix 165	AS3	a	205	244	Right-handed alpha
Helix 166	AS4	b	29	48	Right-handed alpha
Helix 167	AS5	b	49	99	Right-handed alpha
Helix 168	AS6	b	101	144	Right-handed alpha
Helix 169	AS7	b	147	159	Right-handed alpha
Helix 170	AS8	d	2	21	Right-handed alpha
Helix 171	AS9	d	21	138	Right-handed alpha
Helix 172	AT1	d	139	156	Right-handed alpha
Helix 173	AT2	d	168	172	Right-handed 310
Helix 174	AT3	d	176	191	Right-handed alpha
Helix 175	AT4	d	192	194	Right-handed 310
Helix 176	AT5	d	195	216	Right-handed alpha
Helix 177	AT6	d	216	223	Right-handed alpha
Helix 178	AT7	d	230	242	Right-handed alpha
Helix 179	AT8	d	246	259	Right-handed alpha
Helix 180	AT9	d	264	286	Right-handed alpha
Helix 181	AU1	d	289	305	Right-handed alpha
Helix 182	AU2	d	306	313	Right-handed alpha
Helix 183	AU3	d	320	332	Right-handed alpha
Helix 184	AU4	d	340	352	Right-handed alpha
Helix 185	AU5	d	357	373	Right-handed alpha
Helix 186	AU6	d	387	403	Right-handed alpha
Helix 187	AU7	d	414	417	Right-handed 310
Helix 188	AU8	d	432	443	Right-handed alpha

There are 23 sheets in PDB entry 8J0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	38	first strand
Strand 2	A	41	46	anti-parallel
Strand 3	A	54	57	first strand
Strand 4	A	63	69	anti-parallel
Strand 5	A	74	78	anti-parallel
Strand 6	A	90	97	anti-parallel
Strand 7	E	21	27	anti-parallel
Strand 8	E	30	34	anti-parallel
Strand 9	E	46	51	first strand
Strand 10	E	58	69	anti-parallel
Strand 11	E	72	77	anti-parallel
Strand 12	E	89	92	anti-parallel
Strand 13	d	376	382	first strand
Strand 14	d	406	412	parallel
Strand 15	d	421	424	anti-parallel
Strand 16	d	427	430	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	232	237	parallel
Strand 3	A	202	209	parallel
Strand 4	A	266	272	parallel
Strand 5	A	323	326	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	168	172	parallel
Strand 3	A	351	355	parallel
Strand 4	A	374	375	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	69	first strand
Strand 2	B	54	58	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	41	45	anti-parallel
Strand 6	B	73	79	anti-parallel
Strand 7	B	62	69	anti-parallel
Strand 8	F	21	27	anti-parallel
Strand 9	F	89	96	anti-parallel
Strand 10	F	45	51	anti-parallel
Strand 11	F	58	69	anti-parallel
Strand 12	F	72	77	anti-parallel
Strand 13	F	30	34	anti-parallel
Strand 14	F	21	27	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	232	238	parallel
Strand 3	B	202	211	parallel
Strand 4	B	266	271	parallel
Strand 5	B	323	331	parallel
Strand 6	B	168	172	parallel
Strand 7	B	351	355	parallel
Strand 8	B	374	375	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	38	first strand
Strand 2	C	41	45	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	62	69	anti-parallel
Strand 5	C	54	58	anti-parallel
Strand 6	C	90	97	anti-parallel
Strand 7	C	31	38	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	232	238	parallel
Strand 3	C	203	211	parallel
Strand 4	C	266	272	parallel
Strand 5	C	323	331	parallel
Strand 6	C	169	172	parallel
Strand 7	C	351	355	parallel
Strand 8	C	374	375	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	538	first strand
Strand 2	G	194	207	parallel
Strand 3	G	182	190	anti-parallel
Strand 4	G	76	82	parallel
Strand 5	G	113	119	parallel
Strand 6	G	134	136	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	27	first strand
Strand 2	D	30	34	anti-parallel
Strand 3	D	72	77	anti-parallel
Strand 4	D	58	69	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	89	92	anti-parallel
Strand 7	D	21	27	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	127	130	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	110	first strand
Strand 2	D	224	229	parallel
Strand 3	D	195	201	parallel
Strand 4	D	260	265	parallel
Strand 5	D	313	320	parallel
Strand 6	D	166	171	parallel
Strand 7	D	340	343	parallel
Strand 8	D	363	364	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	161	162	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	101	first strand
Strand 2	E	127	130	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	E	166	169	first strand
Strand 3	E	195	203	first strand
Strand 4	E	224	230	parallel
Strand 5	E	260	265	parallel
Strand 6	E	307	308	first strand
Strand 7	E	311	318	anti-parallel
Strand 8	E	340	342	parallel
Strand 9	E	363	364	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	101	first strand
Strand 2	F	127	130	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	110	first strand
Strand 2	F	224	229	parallel
Strand 3	F	195	201	parallel
Strand 4	F	260	265	parallel
Strand 5	F	313	320	parallel
Strand 6	F	166	171	parallel
Strand 7	F	340	343	parallel
Strand 8	F	363	364	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	161	162	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	221	223	first strand
Strand 2	H	41	44	parallel
Strand 3	H	69	72	anti-parallel
Strand 4	H	76	81	anti-parallel
Strand 5	H	4	10	parallel
Strand 6	H	14	20	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	50	54	anti-parallel
Strand 4	H	61	66	anti-parallel
Strand 5	H	83	86	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	17	19	first strand
Strand 2	a	24	26	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J0T