Analysis of interatomic Contacts of Structural Units in PDB entry:
8J12

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J12 entry

There are 5 chains in PDB entry 8J12 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	LYS 422
B	MET 1	ILE 421
D	C 1	A 28
E	T -10	G 0
C	U -193	G 17

There are 29 helices in PDB entry 8J12. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	57	Right-handed alpha
Helix 2	AA2	A	70	83	Right-handed alpha
Helix 3	AA3	A	87	105	Right-handed alpha
Helix 4	AA4	A	105	112	Right-handed alpha
Helix 5	AA5	A	128	130	Right-handed 310
Helix 6	AA6	A	150	158	Right-handed alpha
Helix 7	AA7	A	171	183	Right-handed alpha
Helix 8	AA8	A	250	266	Right-handed alpha
Helix 9	AA9	A	267	269	Right-handed 310
Helix 10	AB1	A	279	284	Right-handed alpha
Helix 11	AB2	A	285	291	Right-handed 310
Helix 12	AB3	A	292	317	Right-handed alpha
Helix 13	AB4	A	326	330	Right-handed 310
Helix 14	AB5	A	341	356	Right-handed alpha
Helix 15	AB6	A	400	410	Right-handed alpha
Helix 16	AB7	A	412	422	Right-handed alpha
Helix 17	AB8	B	16	46	Right-handed alpha
Helix 18	AB9	B	51	55	Right-handed 310
Helix 19	AC1	B	70	80	Right-handed alpha
Helix 20	AC2	B	87	105	Right-handed alpha
Helix 21	AC3	B	105	112	Right-handed alpha
Helix 22	AC4	B	128	130	Right-handed 310
Helix 23	AC5	B	150	158	Right-handed alpha
Helix 24	AC6	B	171	183	Right-handed alpha
Helix 25	AC7	B	247	266	Right-handed alpha
Helix 26	AC8	B	287	317	Right-handed alpha
Helix 27	AC9	B	341	356	Right-handed alpha
Helix 28	AD1	B	400	410	Right-handed alpha
Helix 29	AD2	B	412	421	Right-handed alpha

There are 9 sheets in PDB entry 8J12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	5	first strand
Strand 2	A	200	209	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	5	first strand
Strand 2	A	200	209	anti-parallel
Strand 3	A	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	163	167	anti-parallel
Strand 3	A	142	146	anti-parallel
Strand 4	A	132	136	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	233	236	anti-parallel
Strand 3	A	221	225	anti-parallel
Strand 4	A	320	324	parallel
Strand 5	A	359	363	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	396	399	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	190	195	anti-parallel
Strand 3	B	200	208	anti-parallel
Strand 4	B	2	12	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	143	146	anti-parallel
Strand 7	B	132	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	190	195	anti-parallel
Strand 3	B	200	208	anti-parallel
Strand 4	B	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	217	226	anti-parallel
Strand 4	B	318	324	parallel
Strand 5	B	359	363	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	397	399	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J12

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J12