Analysis of interatomic Contacts of Structural Units in PDB entry:
8J19

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J19 entry

There are 5 chains in PDB entry 8J19 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASN 8	LEU 385
A	THR 4	PHE 354
B	LEU 4	ASN 340
S	VAL 2	LEU 247
G	ALA 7	LYS 64

There are 31 helices in PDB entry 8J19. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	14	18	Right-handed 310
Helix 2	AA2	R	19	48	Right-handed alpha
Helix 3	AA3	R	49	52	Right-handed 310
Helix 4	AA4	R	55	84	Right-handed alpha
Helix 5	AA5	R	89	124	Right-handed alpha
Helix 6	AA6	R	127	132	Right-handed alpha
Helix 7	AA7	R	133	151	Right-handed alpha
Helix 8	AA8	R	152	157	Right-handed 310
Helix 9	AA9	R	175	212	Right-handed alpha
Helix 10	AB1	R	213	216	Right-handed 310
Helix 11	AB2	R	316	342	Right-handed alpha
Helix 12	AB3	R	348	371	Right-handed alpha
Helix 13	AB4	R	374	385	Right-handed alpha
Helix 14	AB5	A	6	33	Right-handed alpha
Helix 15	AB6	A	45	53	Right-handed alpha
Helix 16	AB7	A	211	216	Right-handed 310
Helix 17	AB8	A	242	256	Right-handed alpha
Helix 18	AB9	A	257	260	Right-handed 310
Helix 19	AC1	A	270	281	Right-handed alpha
Helix 20	AC2	A	282	286	Right-handed 310
Helix 21	AC3	A	295	310	Right-handed alpha
Helix 22	AC4	A	329	352	Right-handed alpha
Helix 23	AC5	B	5	26	Right-handed alpha
Helix 24	AC6	B	29	35	Right-handed alpha
Helix 25	AC7	S	28	32	Right-handed 310
Helix 26	AC8	S	53	56	Right-handed 310
Helix 27	AC9	S	62	65	Right-handed 310
Helix 28	AD1	S	87	91	Right-handed 310
Helix 29	AD2	G	8	24	Right-handed alpha
Helix 30	AD3	G	29	44	Right-handed alpha
Helix 31	AD4	G	45	48	Right-handed 310

There are 13 sheets in PDB entry 8J19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	159	161	first strand
Strand 2	R	168	170	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	322	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	141	142	first strand
Strand 2	S	155	160	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	208	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	190	anti-parallel
Strand 6	S	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J19

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J19