Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J1F entry

There are 4 chains in PDB entry 8J1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 148SER 786
B
 VAL 148SER 786
C
 VAL 148SER 786
D
 VAL 148SER 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 8J1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 161Right-handed alpha
Helix 2
AA2
A
162 167Right-handed alpha
Helix 3
AA3
A
169 176Right-handed alpha
Helix 4
AA4
A
182 186Right-handed 310
Helix 5
AA5
A
193 201Right-handed alpha
Helix 6
AA6
A
209 221Right-handed alpha
Helix 7
AA7
A
223 228Right-handed alpha
Helix 8
AA8
A
240 248Right-handed alpha
Helix 9
AA9
A
250 261Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
275 279Right-handed 310
Helix 12
AB3
A
287 295Right-handed alpha
Helix 13
AB4
A
297 307Right-handed alpha
Helix 14
AB5
A
322 331Right-handed alpha
Helix 15
AB6
A
335 357Right-handed alpha
Helix 16
AB7
A
361 365Right-handed 310
Helix 17
AB8
A
372 380Right-handed alpha
Helix 18
AB9
A
382 390Right-handed alpha
Helix 19
AC1
A
432 439Right-handed alpha
Helix 20
AC2
A
445 451Right-handed alpha
Helix 21
AC3
A
452 465Right-handed alpha
Helix 22
AC4
A
468 491Right-handed alpha
Helix 23
AC5
A
504 531Right-handed alpha
Helix 24
AC6
A
550 569Right-handed alpha
Helix 25
AC7
A
575 589Right-handed alpha
Helix 26
AC8
A
589 595Right-handed alpha
Helix 27
AC9
A
600 633Right-handed alpha
Helix 28
AD1
A
667 680Right-handed alpha
Helix 29
AD2
A
684 688Right-handed 310
Helix 30
AD3
A
697 725Right-handed alpha
Helix 31
AD4
A
726 730Right-handed 310
Helix 32
AD5
A
731 748Right-handed alpha
Helix 33
AD6
B
150 161Right-handed alpha
Helix 34
AD7
B
162 167Right-handed alpha
Helix 35
AD8
B
169 176Right-handed alpha
Helix 36
AD9
B
182 186Right-handed 310
Helix 37
AE1
B
193 201Right-handed alpha
Helix 38
AE2
B
209 221Right-handed alpha
Helix 39
AE3
B
223 228Right-handed alpha
Helix 40
AE4
B
240 248Right-handed alpha
Helix 41
AE5
B
250 261Right-handed alpha
Helix 42
AE6
B
270 274Right-handed 310
Helix 43
AE7
B
275 279Right-handed 310
Helix 44
AE8
B
287 295Right-handed alpha
Helix 45
AE9
B
297 307Right-handed alpha
Helix 46
AF1
B
322 331Right-handed alpha
Helix 47
AF2
B
335 357Right-handed alpha
Helix 48
AF3
B
361 365Right-handed 310
Helix 49
AF4
B
372 380Right-handed alpha
Helix 50
AF5
B
382 390Right-handed alpha
Helix 51
AF6
B
432 439Right-handed alpha
Helix 52
AF7
B
445 451Right-handed alpha
Helix 53
AF8
B
452 465Right-handed alpha
Helix 54
AF9
B
468 491Right-handed alpha
Helix 55
AG1
B
504 531Right-handed alpha
Helix 56
AG2
B
550 569Right-handed alpha
Helix 57
AG3
B
575 589Right-handed alpha
Helix 58
AG4
B
589 595Right-handed alpha
Helix 59
AG5
B
600 633Right-handed alpha
Helix 60
AG6
B
667 680Right-handed alpha
Helix 61
AG7
B
684 688Right-handed 310
Helix 62
AG8
B
697 725Right-handed alpha
Helix 63
AG9
B
726 730Right-handed 310
Helix 64
AH1
B
731 748Right-handed alpha
Helix 65
AH2
C
150 161Right-handed alpha
Helix 66
AH3
C
162 167Right-handed alpha
Helix 67
AH4
C
169 176Right-handed alpha
Helix 68
AH5
C
182 186Right-handed 310
Helix 69
AH6
C
193 201Right-handed alpha
Helix 70
AH7
C
209 221Right-handed alpha
Helix 71
AH8
C
223 228Right-handed alpha
Helix 72
AH9
C
240 248Right-handed alpha
Helix 73
AI1
C
250 261Right-handed alpha
Helix 74
AI2
C
270 274Right-handed 310
Helix 75
AI3
C
275 279Right-handed 310
Helix 76
AI4
C
287 295Right-handed alpha
Helix 77
AI5
C
297 307Right-handed alpha
Helix 78
AI6
C
322 331Right-handed alpha
Helix 79
AI7
C
335 357Right-handed alpha
Helix 80
AI8
C
361 365Right-handed 310
Helix 81
AI9
C
372 380Right-handed alpha
Helix 82
AJ1
C
382 390Right-handed alpha
Helix 83
AJ2
C
432 439Right-handed alpha
Helix 84
AJ3
C
445 451Right-handed alpha
Helix 85
AJ4
C
452 465Right-handed alpha
Helix 86
AJ5
C
468 491Right-handed alpha
Helix 87
AJ6
C
504 531Right-handed alpha
Helix 88
AJ7
C
550 569Right-handed alpha
Helix 89
AJ8
C
575 589Right-handed alpha
Helix 90
AJ9
C
589 595Right-handed alpha
Helix 91
AK1
C
600 633Right-handed alpha
Helix 92
AK2
C
667 680Right-handed alpha
Helix 93
AK3
C
684 688Right-handed 310
Helix 94
AK4
C
697 725Right-handed alpha
Helix 95
AK5
C
726 730Right-handed 310
Helix 96
AK6
C
731 748Right-handed alpha
Helix 97
AK7
D
150 161Right-handed alpha
Helix 98
AK8
D
162 167Right-handed alpha
Helix 99
AK9
D
169 176Right-handed alpha
Helix 100
AL1
D
182 186Right-handed 310
Helix 101
AL2
D
193 201Right-handed alpha
Helix 102
AL3
D
209 221Right-handed alpha
Helix 103
AL4
D
223 228Right-handed alpha
Helix 104
AL5
D
240 248Right-handed alpha
Helix 105
AL6
D
250 261Right-handed alpha
Helix 106
AL7
D
270 274Right-handed 310
Helix 107
AL8
D
275 279Right-handed 310
Helix 108
AL9
D
287 295Right-handed alpha
Helix 109
AM1
D
297 307Right-handed alpha
Helix 110
AM2
D
322 331Right-handed alpha
Helix 111
AM3
D
335 357Right-handed alpha
Helix 112
AM4
D
361 365Right-handed 310
Helix 113
AM5
D
372 380Right-handed alpha
Helix 114
AM6
D
382 390Right-handed alpha
Helix 115
AM7
D
432 439Right-handed alpha
Helix 116
AM8
D
445 451Right-handed alpha
Helix 117
AM9
D
452 465Right-handed alpha
Helix 118
AN1
D
468 491Right-handed alpha
Helix 119
AN2
D
504 531Right-handed alpha
Helix 120
AN3
D
550 569Right-handed alpha
Helix 121
AN4
D
575 589Right-handed alpha
Helix 122
AN5
D
589 595Right-handed alpha
Helix 123
AN6
D
600 633Right-handed alpha
Helix 124
AN7
D
667 680Right-handed alpha
Helix 125
AN8
D
684 688Right-handed 310
Helix 126
AN9
D
697 725Right-handed alpha
Helix 127
AO1
D
726 730Right-handed 310
Helix 128
AO2
D
731 748Right-handed alpha
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There are 4 sheets in PDB entry 8J1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
777 783anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 411first strand
Strand 2
B
414 420anti-parallel
Strand 3
B
777 783anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
409 411first strand
Strand 2
C
414 420anti-parallel
Strand 3
C
777 783anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
409 411first strand
Strand 2
D
414 420anti-parallel
Strand 3
D
777 783anti-parallel
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