Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J1G entry

There are 4 chains in PDB entry 8J1G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ARG 315
B	THR 4	ARG 315
C	THR 4	ARG 315
D	THR 4	ARG 315

There are 59 helices in PDB entry 8J1G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	18	Right-handed alpha
Helix 2	AA2	A	21	35	Right-handed alpha
Helix 3	AA3	A	49	51	Right-handed 310
Helix 4	AA4	A	63	65	Right-handed 310
Helix 5	AA5	A	104	124	Right-handed alpha
Helix 6	AA6	A	137	148	Right-handed alpha
Helix 7	AA7	A	149	151	Right-handed 310
Helix 8	AA8	A	160	166	Right-handed 310
Helix 9	AA9	A	167	176	Right-handed alpha
Helix 10	AB1	A	186	191	Right-handed alpha
Helix 11	AB2	A	209	213	Right-handed 310
Helix 12	AB3	A	233	240	Right-handed 310
Helix 13	AB4	A	249	254	Right-handed alpha
Helix 14	AB5	A	254	264	Right-handed alpha
Helix 15	AB6	A	267	271	Right-handed 310
Helix 16	AB7	A	275	279	Right-handed alpha
Helix 17	AB8	A	299	315	Right-handed alpha
Helix 18	AB9	B	9	19	Right-handed alpha
Helix 19	AC1	B	21	36	Right-handed alpha
Helix 20	AC2	B	63	65	Right-handed 310
Helix 21	AC3	B	104	124	Right-handed alpha
Helix 22	AC4	B	137	148	Right-handed alpha
Helix 23	AC5	B	160	166	Right-handed 310
Helix 24	AC6	B	167	176	Right-handed alpha
Helix 25	AC7	B	186	191	Right-handed alpha
Helix 26	AC8	B	209	213	Right-handed 310
Helix 27	AC9	B	233	240	Right-handed 310
Helix 28	AD1	B	249	254	Right-handed alpha
Helix 29	AD2	B	254	264	Right-handed alpha
Helix 30	AD3	B	267	271	Right-handed 310
Helix 31	AD4	B	275	279	Right-handed alpha
Helix 32	AD5	B	299	315	Right-handed alpha
Helix 33	AD6	C	9	18	Right-handed alpha
Helix 34	AD7	C	21	36	Right-handed alpha
Helix 35	AD8	C	49	51	Right-handed 310
Helix 36	AD9	C	104	124	Right-handed alpha
Helix 37	AE1	C	137	148	Right-handed alpha
Helix 38	AE2	C	186	191	Right-handed alpha
Helix 39	AE3	C	209	213	Right-handed 310
Helix 40	AE4	C	233	240	Right-handed 310
Helix 41	AE5	C	249	253	Right-handed 310
Helix 42	AE6	C	254	264	Right-handed alpha
Helix 43	AE7	C	267	271	Right-handed 310
Helix 44	AE8	C	275	280	Right-handed alpha
Helix 45	AE9	C	299	315	Right-handed alpha
Helix 46	AF1	D	9	19	Right-handed alpha
Helix 47	AF2	D	21	35	Right-handed alpha
Helix 48	AF3	D	104	124	Right-handed alpha
Helix 49	AF4	D	137	148	Right-handed alpha
Helix 50	AF5	D	160	164	Right-handed 310
Helix 51	AF6	D	172	177	Right-handed alpha
Helix 52	AF7	D	186	192	Right-handed alpha
Helix 53	AF8	D	209	213	Right-handed 310
Helix 54	AF9	D	233	240	Right-handed 310
Helix 55	AG1	D	249	253	Right-handed 310
Helix 56	AG2	D	254	264	Right-handed alpha
Helix 57	AG3	D	267	271	Right-handed 310
Helix 58	AG4	D	275	279	Right-handed alpha
Helix 59	AG5	D	299	315	Right-handed alpha

There are 12 sheets in PDB entry 8J1G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	98	103	parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	67	76	anti-parallel
Strand 5	A	53	62	anti-parallel
Strand 6	A	44	47	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	98	103	parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	67	76	anti-parallel
Strand 5	A	83	84	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	155	159	parallel
Strand 3	A	130	134	parallel
Strand 4	A	196	199	parallel
Strand 5	A	218	221	parallel
Strand 6	A	292	295	parallel
Strand 7	A	241	244	parallel
Strand 8	A	273	274	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	98	103	parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	67	77	anti-parallel
Strand 5	B	53	62	anti-parallel
Strand 6	B	44	47	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	98	103	parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	67	77	anti-parallel
Strand 5	B	82	84	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	155	159	parallel
Strand 3	B	130	134	parallel
Strand 4	B	196	199	parallel
Strand 5	B	218	221	parallel
Strand 6	B	292	295	parallel
Strand 7	B	241	244	parallel
Strand 8	B	273	274	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	98	103	parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	67	76	anti-parallel
Strand 5	C	53	62	anti-parallel
Strand 6	C	44	47	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	53	62	anti-parallel
Strand 3	C	67	76	anti-parallel
Strand 4	C	83	84	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	155	159	parallel
Strand 3	C	130	134	parallel
Strand 4	C	196	199	parallel
Strand 5	C	218	221	parallel
Strand 6	C	292	295	parallel
Strand 7	C	241	244	parallel
Strand 8	C	273	274	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	98	103	parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	67	76	anti-parallel
Strand 5	D	53	62	anti-parallel
Strand 6	D	44	47	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	98	103	parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	67	76	anti-parallel
Strand 5	D	83	84	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	155	159	parallel
Strand 3	D	130	134	parallel
Strand 4	D	196	199	parallel
Strand 5	D	218	221	parallel
Strand 6	D	292	295	parallel
Strand 7	D	241	244	parallel
Strand 8	D	273	274	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J1G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1G