Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J1H entry

There are 4 chains in PDB entry 8J1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 148SER 786
D
 VAL 148SER 786
B
 VAL 148SER 786
A
 VAL 148SER 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 8J1H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
150 160Right-handed alpha
Helix 2
AA2
C
163 176Right-handed alpha
Helix 3
AA3
C
182 186Right-handed 310
Helix 4
AA4
C
193 201Right-handed alpha
Helix 5
AA5
C
209 221Right-handed alpha
Helix 6
AA6
C
223 228Right-handed alpha
Helix 7
AA7
C
240 248Right-handed alpha
Helix 8
AA8
C
250 261Right-handed alpha
Helix 9
AA9
C
270 274Right-handed 310
Helix 10
AB1
C
287 295Right-handed alpha
Helix 11
AB2
C
297 307Right-handed alpha
Helix 12
AB3
C
322 331Right-handed alpha
Helix 13
AB4
C
336 357Right-handed alpha
Helix 14
AB5
C
361 365Right-handed 310
Helix 15
AB6
C
372 381Right-handed alpha
Helix 16
AB7
C
382 390Right-handed alpha
Helix 17
AB8
C
396 403Right-handed 310
Helix 18
AB9
C
432 439Right-handed alpha
Helix 19
AC1
C
445 450Right-handed alpha
Helix 20
AC2
C
453 467Right-handed alpha
Helix 21
AC3
C
468 490Right-handed alpha
Helix 22
AC4
C
504 531Right-handed alpha
Helix 23
AC5
C
550 570Right-handed alpha
Helix 24
AC6
C
576 593Right-handed alpha
Helix 25
AC7
C
601 610Right-handed alpha
Helix 26
AC8
C
611 636Right-handed alpha
Helix 27
AC9
C
667 677Right-handed alpha
Helix 28
AD1
C
696 724Right-handed alpha
Helix 29
AD2
C
729 748Right-handed alpha
Helix 30
AD3
D
150 160Right-handed alpha
Helix 31
AD4
D
163 176Right-handed alpha
Helix 32
AD5
D
182 186Right-handed 310
Helix 33
AD6
D
193 201Right-handed alpha
Helix 34
AD7
D
209 221Right-handed alpha
Helix 35
AD8
D
223 228Right-handed alpha
Helix 36
AD9
D
240 248Right-handed alpha
Helix 37
AE1
D
250 261Right-handed alpha
Helix 38
AE2
D
270 274Right-handed 310
Helix 39
AE3
D
287 295Right-handed alpha
Helix 40
AE4
D
297 307Right-handed alpha
Helix 41
AE5
D
322 331Right-handed alpha
Helix 42
AE6
D
336 357Right-handed alpha
Helix 43
AE7
D
361 365Right-handed 310
Helix 44
AE8
D
372 381Right-handed alpha
Helix 45
AE9
D
382 390Right-handed alpha
Helix 46
AF1
D
396 403Right-handed 310
Helix 47
AF2
D
432 439Right-handed alpha
Helix 48
AF3
D
445 450Right-handed alpha
Helix 49
AF4
D
453 467Right-handed alpha
Helix 50
AF5
D
468 490Right-handed alpha
Helix 51
AF6
D
504 531Right-handed alpha
Helix 52
AF7
D
550 570Right-handed alpha
Helix 53
AF8
D
576 593Right-handed alpha
Helix 54
AF9
D
601 610Right-handed alpha
Helix 55
AG1
D
611 636Right-handed alpha
Helix 56
AG2
D
667 677Right-handed alpha
Helix 57
AG3
D
696 724Right-handed alpha
Helix 58
AG4
D
729 748Right-handed alpha
Helix 59
AG5
B
150 160Right-handed alpha
Helix 60
AG6
B
163 176Right-handed alpha
Helix 61
AG7
B
182 186Right-handed 310
Helix 62
AG8
B
193 201Right-handed alpha
Helix 63
AG9
B
209 221Right-handed alpha
Helix 64
AH1
B
223 228Right-handed alpha
Helix 65
AH2
B
240 248Right-handed alpha
Helix 66
AH3
B
250 261Right-handed alpha
Helix 67
AH4
B
270 274Right-handed 310
Helix 68
AH5
B
287 295Right-handed alpha
Helix 69
AH6
B
297 307Right-handed alpha
Helix 70
AH7
B
322 331Right-handed alpha
Helix 71
AH8
B
336 357Right-handed alpha
Helix 72
AH9
B
361 365Right-handed 310
Helix 73
AI1
B
372 381Right-handed alpha
Helix 74
AI2
B
382 390Right-handed alpha
Helix 75
AI3
B
396 403Right-handed 310
Helix 76
AI4
B
432 439Right-handed alpha
Helix 77
AI5
B
445 450Right-handed alpha
Helix 78
AI6
B
453 467Right-handed alpha
Helix 79
AI7
B
468 490Right-handed alpha
Helix 80
AI8
B
504 531Right-handed alpha
Helix 81
AI9
B
550 570Right-handed alpha
Helix 82
AJ1
B
576 593Right-handed alpha
Helix 83
AJ2
B
601 610Right-handed alpha
Helix 84
AJ3
B
611 636Right-handed alpha
Helix 85
AJ4
B
667 677Right-handed alpha
Helix 86
AJ5
B
696 724Right-handed alpha
Helix 87
AJ6
B
729 748Right-handed alpha
Helix 88
AJ7
A
150 160Right-handed alpha
Helix 89
AJ8
A
163 176Right-handed alpha
Helix 90
AJ9
A
182 186Right-handed 310
Helix 91
AK1
A
193 201Right-handed alpha
Helix 92
AK2
A
209 221Right-handed alpha
Helix 93
AK3
A
223 228Right-handed alpha
Helix 94
AK4
A
240 248Right-handed alpha
Helix 95
AK5
A
250 261Right-handed alpha
Helix 96
AK6
A
270 274Right-handed 310
Helix 97
AK7
A
287 295Right-handed alpha
Helix 98
AK8
A
297 307Right-handed alpha
Helix 99
AK9
A
322 331Right-handed alpha
Helix 100
AL1
A
336 357Right-handed alpha
Helix 101
AL2
A
361 365Right-handed 310
Helix 102
AL3
A
372 381Right-handed alpha
Helix 103
AL4
A
382 390Right-handed alpha
Helix 104
AL5
A
396 403Right-handed 310
Helix 105
AL6
A
432 439Right-handed alpha
Helix 106
AL7
A
445 450Right-handed alpha
Helix 107
AL8
A
453 467Right-handed alpha
Helix 108
AL9
A
468 490Right-handed alpha
Helix 109
AM1
A
504 531Right-handed alpha
Helix 110
AM2
A
550 570Right-handed alpha
Helix 111
AM3
A
576 593Right-handed alpha
Helix 112
AM4
A
601 610Right-handed alpha
Helix 113
AM5
A
611 636Right-handed alpha
Helix 114
AM6
A
667 677Right-handed alpha
Helix 115
AM7
A
696 724Right-handed alpha
Helix 116
AM8
A
729 748Right-handed alpha
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There are 4 sheets in PDB entry 8J1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
407 410first strand
Strand 2
C
414 417anti-parallel
Strand 3
C
780 783anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
407 410first strand
Strand 2
D
414 417anti-parallel
Strand 3
D
780 783anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 410first strand
Strand 2
B
414 417anti-parallel
Strand 3
B
780 783anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
414 417anti-parallel
Strand 3
A
780 783anti-parallel
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