Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J1P entry

There are 4 chains in PDB entry 8J1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 164ALA 1477
C
 MET 1GLY 76
D
 MET 1ARG 74
E
 MET 1ARG 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8J1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 181Right-handed alpha
Helix 2
AA2
A
182 184Right-handed 310
Helix 3
AA3
A
187 202Right-handed alpha
Helix 4
AA4
A
204 210Right-handed alpha
Helix 5
AA5
A
213 227Right-handed alpha
Helix 6
AA6
A
233 251Right-handed alpha
Helix 7
AA7
A
253 260Right-handed alpha
Helix 8
AA8
A
262 273Right-handed alpha
Helix 9
AA9
A
276 292Right-handed alpha
Helix 10
AB1
A
294 302Right-handed alpha
Helix 11
AB2
A
310 314Right-handed 310
Helix 12
AB3
A
316 330Right-handed alpha
Helix 13
AB4
A
334 336Right-handed 310
Helix 14
AB5
A
337 354Right-handed alpha
Helix 15
AB6
A
357 362Right-handed alpha
Helix 16
AB7
A
363 376Right-handed alpha
Helix 17
AB8
A
386 396Right-handed alpha
Helix 18
AB9
A
403 420Right-handed alpha
Helix 19
AC1
A
422 431Right-handed alpha
Helix 20
AC2
A
434 444Right-handed alpha
Helix 21
AC3
A
452 460Right-handed alpha
Helix 22
AC4
A
461 475Right-handed alpha
Helix 23
AC5
A
504 521Right-handed alpha
Helix 24
AC6
A
524 539Right-handed alpha
Helix 25
AC7
A
543 548Right-handed alpha
Helix 26
AC8
A
550 562Right-handed alpha
Helix 27
AC9
A
564 569Right-handed alpha
Helix 28
AD1
A
576 597Right-handed alpha
Helix 29
AD2
A
597 609Right-handed alpha
Helix 30
AD3
A
610 624Right-handed alpha
Helix 31
AD4
A
684 702Right-handed alpha
Helix 32
AD5
A
712 726Right-handed alpha
Helix 33
AD6
A
733 749Right-handed alpha
Helix 34
AD7
A
756 763Right-handed alpha
Helix 35
AD8
A
764 776Right-handed alpha
Helix 36
AD9
A
779 791Right-handed alpha
Helix 37
AE1
A
794 810Right-handed alpha
Helix 38
AE2
A
824 828Right-handed 310
Helix 39
AE3
A
863 876Right-handed alpha
Helix 40
AE4
A
906 910Right-handed alpha
Helix 41
AE5
A
928 938Right-handed alpha
Helix 42
AE6
A
941 948Right-handed alpha
Helix 43
AE7
A
978 982Right-handed 310
Helix 44
AE8
A
991 993Right-handed 310
Helix 45
AE9
A
994 1006Right-handed alpha
Helix 46
AF1
A
1016 1028Right-handed alpha
Helix 47
AF2
A
1029 1034Right-handed alpha
Helix 48
AF3
A
1039 1049Right-handed alpha
Helix 49
AF4
A
1054 1067Right-handed alpha
Helix 50
AF5
A
1068 1072Right-handed 310
Helix 51
AF6
A
1106 1108Right-handed 310
Helix 52
AF7
A
1109 1122Right-handed alpha
Helix 53
AF8
A
1139 1154Right-handed alpha
Helix 54
AF9
A
1155 1160Right-handed 310
Helix 55
AG1
A
1199 1217Right-handed alpha
Helix 56
AG2
A
1226 1238Right-handed alpha
Helix 57
AG3
A
1248 1256Right-handed alpha
Helix 58
AG4
A
1259 1272Right-handed alpha
Helix 59
AG5
A
1275 1283Right-handed alpha
Helix 60
AG6
A
1309 1322Right-handed alpha
Helix 61
AG7
A
1326 1341Right-handed alpha
Helix 62
AG8
A
1342 1349Right-handed 310
Helix 63
AG9
A
1350 1353Right-handed 310
Helix 64
AH1
A
1354 1359Right-handed alpha
Helix 65
AH2
A
1366 1372Right-handed alpha
Helix 66
AH3
A
1387 1395Right-handed alpha
Helix 67
AH4
A
1398 1410Right-handed alpha
Helix 68
AH5
A
1419 1423Right-handed 310
Helix 69
AH6
A
1461 1477Right-handed alpha
Helix 70
AH7
C
22 35Right-handed alpha
Helix 71
AH8
C
37 41Right-handed 310
Helix 72
AH9
D
23 34Right-handed alpha
Helix 73
AI1
D
37 41Right-handed 310
Helix 74
AI2
E
24 34Right-handed alpha
Helix 75
AI3
E
37 41Right-handed 310
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There are 7 sheets in PDB entry 8J1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 835first strand
Strand 2
A
855 859anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 838first strand
Strand 2
A
953 954parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1100 1105first strand
Strand 2
A
1127 1132parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1429 1432first strand
Strand 2
A
1454 1457parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
4 6anti-parallel
Strand 3
C
66 70parallel
Strand 4
C
42 44anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 14first strand
Strand 2
D
4 6anti-parallel
Strand 3
D
66 70parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 6anti-parallel
Strand 3
E
66 70parallel
Strand 4
E
42 44anti-parallel
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