Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J1Q entry

There are 24 chains in PDB entry 8J1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	A 24	G 26
E	G 28	C 32
E	A 35	G 37
E	C 40	C 43
E	G 45	A 47
E	C 49	G 50
E	G 52	G 52
E	G 54	G 54
E	A 56	G 58
E	A 60	G 65
D	G 3	G 3
D	C 5	G 7
D	A 9	C 16
D	A 18	G 19
D	G 21	G 21
D	A 23	A 23
D	G 25	C 29
D	G 31	G 33
D	G 36	A 40
D	A 42	A 42
D	C 44	C 50
A	ALA 3	GLY 111
B	GLN 1	SER 122
C	THR 333	LYS 528

There are 10 helices in PDB entry 8J1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	B	28	32	Right-handed 310
Helix 3	AA3	B	62	65	Right-handed 310
Helix 4	AA4	B	87	91	Right-handed 310
Helix 5	AA5	C	337	343	Right-handed alpha
Helix 6	AA6	C	349	353	Right-handed 310
Helix 7	AA7	C	383	390	Right-handed 310
Helix 8	AA8	C	404	408	Right-handed alpha
Helix 9	AA9	C	416	422	Right-handed alpha
Helix 10	AB1	C	438	443	Right-handed alpha

There are 8 sheets in PDB entry 8J1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	106	108	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	23	first strand
Strand 2	A	72	78	anti-parallel
Strand 3	A	65	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	87	91	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	35	39	anti-parallel
Strand 4	B	92	97	anti-parallel
Strand 5	B	114	116	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	374	380	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1Q