Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J1R entry

There are 2 chains in PDB entry 8J1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 710ALA 1477
C
 MET 1VAL 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8J1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
710 726Right-handed alpha
Helix 2
AA2
A
733 749Right-handed alpha
Helix 3
AA3
A
756 763Right-handed alpha
Helix 4
AA4
A
764 775Right-handed alpha
Helix 5
AA5
A
779 792Right-handed alpha
Helix 6
AA6
A
794 810Right-handed alpha
Helix 7
AA7
A
824 828Right-handed 310
Helix 8
AA8
A
926 938Right-handed alpha
Helix 9
AA9
A
991 993Right-handed 310
Helix 10
AB1
A
994 1007Right-handed alpha
Helix 11
AB2
A
1016 1029Right-handed alpha
Helix 12
AB3
A
1029 1035Right-handed alpha
Helix 13
AB4
A
1039 1049Right-handed alpha
Helix 14
AB5
A
1050 1053Right-handed 310
Helix 15
AB6
A
1054 1066Right-handed alpha
Helix 16
AB7
A
1068 1082Right-handed alpha
Helix 17
AB8
A
1090 1096Right-handed alpha
Helix 18
AB9
A
1109 1121Right-handed alpha
Helix 19
AC1
A
1139 1154Right-handed alpha
Helix 20
AC2
A
1197 1217Right-handed alpha
Helix 21
AC3
A
1226 1238Right-handed alpha
Helix 22
AC4
A
1247 1256Right-handed alpha
Helix 23
AC5
A
1259 1272Right-handed alpha
Helix 24
AC6
A
1275 1283Right-handed alpha
Helix 25
AC7
A
1306 1308Right-handed 310
Helix 26
AC8
A
1309 1322Right-handed alpha
Helix 27
AC9
A
1323 1339Right-handed alpha
Helix 28
AD1
A
1342 1349Right-handed 310
Helix 29
AD2
A
1350 1359Right-handed alpha
Helix 30
AD3
A
1366 1373Right-handed alpha
Helix 31
AD4
A
1384 1396Right-handed alpha
Helix 32
AD5
A
1399 1410Right-handed alpha
Helix 33
AD6
A
1419 1423Right-handed 310
Helix 34
AD7
A
1461 1476Right-handed alpha
Helix 35
AD8
C
2 17Right-handed alpha
Helix 36
AD9
C
99 111Right-handed alpha
Helix 37
AE1
C
121 129Right-handed alpha
Helix 38
AE2
C
133 146Right-handed alpha
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There are 4 sheets in PDB entry 8J1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
853 858first strand
Strand 2
A
832 838anti-parallel
Strand 3
A
950 954parallel
Strand 4
A
914 915anti-parallel
Strand 5
A
920 921anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1100 1105first strand
Strand 2
A
1127 1132parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1375 1377first strand
Strand 2
A
1428 1432parallel
Strand 3
A
1453 1457parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 26first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
50 56anti-parallel
Strand 4
C
67 70anti-parallel
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