Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J1V entry

There are 4 chains in PDB entry 8J1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	LEU 1141
H	VAL 3	SER 117
K	ASP 1	ILE 108
B	THR 27	THR 333

There are 66 helices in PDB entry 8J1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	366	372	Right-handed alpha
Helix 4	AA4	A	384	388	Right-handed 310
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	737	742	Right-handed alpha
Helix 8	AA8	A	746	755	Right-handed alpha
Helix 9	AA9	A	758	783	Right-handed alpha
Helix 10	AB1	A	796	800	Right-handed 310
Helix 11	AB2	A	816	826	Right-handed alpha
Helix 12	AB3	A	866	884	Right-handed alpha
Helix 13	AB4	A	886	891	Right-handed alpha
Helix 14	AB5	A	897	910	Right-handed alpha
Helix 15	AB6	A	912	919	Right-handed alpha
Helix 16	AB7	A	919	941	Right-handed alpha
Helix 17	AB8	A	942	944	Right-handed 310
Helix 18	AB9	A	945	967	Right-handed alpha
Helix 19	AC1	A	976	984	Right-handed alpha
Helix 20	AC2	A	985	1033	Right-handed alpha
Helix 21	AC3	H	29	33	Right-handed 310
Helix 22	AC4	H	61	65	Right-handed 310
Helix 23	AC5	B	294	304	Right-handed alpha
Helix 24	AC6	B	337	343	Right-handed alpha
Helix 25	AC7	B	366	372	Right-handed alpha
Helix 26	AC8	B	384	388	Right-handed 310
Helix 27	AC9	B	405	410	Right-handed 310
Helix 28	AD1	B	416	422	Right-handed alpha
Helix 29	AD2	B	737	742	Right-handed alpha
Helix 30	AD3	B	746	755	Right-handed alpha
Helix 31	AD4	B	758	783	Right-handed alpha
Helix 32	AD5	B	796	800	Right-handed 310
Helix 33	AD6	B	816	826	Right-handed alpha
Helix 34	AD7	B	866	884	Right-handed alpha
Helix 35	AD8	B	886	891	Right-handed alpha
Helix 36	AD9	B	897	910	Right-handed alpha
Helix 37	AE1	B	912	919	Right-handed alpha
Helix 38	AE2	B	919	941	Right-handed alpha
Helix 39	AE3	B	942	944	Right-handed 310
Helix 40	AE4	B	945	967	Right-handed alpha
Helix 41	AE5	B	976	984	Right-handed alpha
Helix 42	AE6	B	985	1033	Right-handed alpha
Helix 43	AE7	C	29	33	Right-handed 310
Helix 44	AE8	C	61	65	Right-handed 310
Helix 45	AE9	E	294	304	Right-handed alpha
Helix 46	AF1	E	337	343	Right-handed alpha
Helix 47	AF2	E	366	372	Right-handed alpha
Helix 48	AF3	E	384	388	Right-handed 310
Helix 49	AF4	E	405	410	Right-handed 310
Helix 50	AF5	E	416	422	Right-handed alpha
Helix 51	AF6	E	737	742	Right-handed alpha
Helix 52	AF7	E	746	755	Right-handed alpha
Helix 53	AF8	E	758	783	Right-handed alpha
Helix 54	AF9	E	796	800	Right-handed 310
Helix 55	AG1	E	816	826	Right-handed alpha
Helix 56	AG2	E	866	884	Right-handed alpha
Helix 57	AG3	E	886	891	Right-handed alpha
Helix 58	AG4	E	897	910	Right-handed alpha
Helix 59	AG5	E	912	919	Right-handed alpha
Helix 60	AG6	E	919	941	Right-handed alpha
Helix 61	AG7	E	942	944	Right-handed 310
Helix 62	AG8	E	945	967	Right-handed alpha
Helix 63	AG9	E	976	984	Right-handed alpha
Helix 64	AH1	E	985	1033	Right-handed alpha
Helix 65	AH2	F	29	33	Right-handed 310
Helix 66	AH3	F	61	65	Right-handed 310

There are 54 sheets in PDB entry 8J1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	63	67	anti-parallel
Strand 3	A	265	268	anti-parallel
Strand 4	A	90	95	anti-parallel
Strand 5	A	189	197	anti-parallel
Strand 6	A	200	208	anti-parallel
Strand 7	A	222	229	anti-parallel
Strand 8	A	38	39	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	57	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	104	107	anti-parallel
Strand 5	A	237	240	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	319	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	524	525	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	543	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	575	577	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	660	first strand
Strand 2	A	691	697	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	B	788	789	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	728	first strand
Strand 2	A	1059	1075	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	E	702	703	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1083	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	52	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	63	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	48	first strand
Strand 2	K	35	37	anti-parallel
Strand 3	K	85	87	anti-parallel
Strand 4	K	104	105	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	265	268	anti-parallel
Strand 4	B	90	95	anti-parallel
Strand 5	B	189	197	anti-parallel
Strand 6	B	200	208	anti-parallel
Strand 7	B	222	229	anti-parallel
Strand 8	B	38	39	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	57	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	126	129	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	104	107	anti-parallel
Strand 5	B	237	240	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	398	403	anti-parallel
Strand 3	B	507	514	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	543	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	575	577	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	660	first strand
Strand 2	B	691	697	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	E	788	789	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	728	first strand
Strand 2	B	1059	1075	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1083	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel
Strand 3	B	1113	1114	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	112	116	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	46	52	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	63	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	35	37	anti-parallel
Strand 3	D	85	87	anti-parallel
Strand 4	D	104	105	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	63	67	anti-parallel
Strand 3	E	265	268	anti-parallel
Strand 4	E	90	95	anti-parallel
Strand 5	E	189	197	anti-parallel
Strand 6	E	200	208	anti-parallel
Strand 7	E	222	229	anti-parallel
Strand 8	E	38	39	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	57	first strand
Strand 2	E	271	279	anti-parallel
Strand 3	E	285	290	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	172	first strand
Strand 2	E	126	129	anti-parallel
Strand 3	E	117	121	anti-parallel
Strand 4	E	104	107	anti-parallel
Strand 5	E	237	240	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	319	first strand
Strand 2	E	592	599	anti-parallel
Strand 3	E	609	613	anti-parallel
Strand 4	E	648	651	anti-parallel
Strand 5	E	642	644	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	355	first strand
Strand 2	E	398	403	anti-parallel
Strand 3	E	507	514	anti-parallel
Strand 4	E	431	437	anti-parallel
Strand 5	E	376	380	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	391	392	first strand
Strand 2	E	524	525	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	543	first strand
Strand 2	E	546	554	anti-parallel
Strand 3	E	584	588	anti-parallel
Strand 4	E	575	577	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	654	660	first strand
Strand 2	E	691	697	parallel
Strand 3	E	670	675	anti-parallel
Strand 4	E	664	667	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	712	728	first strand
Strand 2	E	1059	1075	anti-parallel
Strand 3	E	1047	1056	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	733	736	first strand
Strand 2	E	858	861	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1120	1122	first strand
Strand 2	E	1086	1090	anti-parallel
Strand 3	E	1081	1083	anti-parallel
Strand 4	E	1133	1134	parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1094	1097	first strand
Strand 2	E	1102	1105	anti-parallel
Strand 3	E	1113	1114	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	19	26	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	112	116	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	46	52	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	63	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	48	first strand
Strand 2	G	35	37	anti-parallel
Strand 3	G	85	87	anti-parallel
Strand 4	G	104	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J1V