Analysis of interatomic Contacts of Structural Units in PDB entry:
8J20

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J20 entry

There are 5 chains in PDB entry 8J20 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 14	SER 353
B	VAL 40	GLU 284
C	GLY 2	PHE 354
D	ASN 13	ARG 292
E	ASN 5	PHE 61

There are 24 helices in PDB entry 8J20. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	36	Right-handed alpha
Helix 2	AA2	A	40	46	Right-handed alpha
Helix 3	AA3	B	91	94	Right-handed 310
Helix 4	AA4	B	100	103	Right-handed 310
Helix 5	AA5	B	125	129	Right-handed 310
Helix 6	AA6	C	3	6	Right-handed 310
Helix 7	AA7	C	7	32	Right-handed alpha
Helix 8	AA8	C	45	54	Right-handed alpha
Helix 9	AA9	C	207	212	Right-handed alpha
Helix 10	AB1	C	241	255	Right-handed alpha
Helix 11	AB2	C	270	281	Right-handed alpha
Helix 12	AB3	C	295	310	Right-handed alpha
Helix 13	AB4	C	330	351	Right-handed alpha
Helix 14	AB5	D	14	46	Right-handed alpha
Helix 15	AB6	D	48	73	Right-handed alpha
Helix 16	AB7	D	87	119	Right-handed alpha
Helix 17	AB8	D	119	126	Right-handed alpha
Helix 18	AB9	D	128	155	Right-handed alpha
Helix 19	AC1	D	177	211	Right-handed alpha
Helix 20	AC2	D	216	252	Right-handed alpha
Helix 21	AC3	D	257	280	Right-handed alpha
Helix 22	AC4	D	280	291	Right-handed alpha
Helix 23	AC5	E	7	24	Right-handed alpha
Helix 24	AC6	E	29	44	Right-handed alpha

There are 13 sheets in PDB entry 8J20. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	347	351	anti-parallel
Strand 3	A	338	342	anti-parallel
Strand 4	A	326	331	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	84	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	99	105	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	145	150	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	177	181	anti-parallel
Strand 3	A	187	191	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	229	233	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	251	256	anti-parallel
Strand 3	A	260	265	anti-parallel
Strand 4	A	270	276	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	289	first strand
Strand 2	A	295	300	anti-parallel
Strand 3	A	305	309	anti-parallel
Strand 4	A	315	319	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	56	62	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	107	111	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	153	157	parallel
Strand 3	B	131	137	anti-parallel
Strand 4	B	71	77	anti-parallel
Strand 5	B	83	89	anti-parallel
Strand 6	B	96	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	153	157	parallel
Strand 3	B	131	137	anti-parallel
Strand 4	B	148	149	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	193	199	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	241	246	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	281	283	parallel
Strand 3	B	263	269	anti-parallel
Strand 4	B	212	217	anti-parallel
Strand 5	B	224	228	anti-parallel
Strand 6	B	232	233	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	34	40	parallel
Strand 3	C	220	226	parallel
Strand 4	C	264	269	parallel
Strand 5	C	319	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J20

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J20