Analysis of interatomic Contacts of Structural Units in PDB entry:
8J22

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J22 entry

There are 5 chains in PDB entry 8J22 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	SER 340
B	LEU 5	PHE 354
C	SER 7	LEU 291
D	ASN 1	PHE 57
F	ASP 1	ALA 235

There are 28 helices in PDB entry 8J22. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	24	Right-handed alpha
Helix 2	AA2	A	27	32	Right-handed alpha
Helix 3	AA3	A	33	35	Right-handed 310
Helix 4	AA4	B	6	32	Right-handed alpha
Helix 5	AA5	B	46	51	Right-handed alpha
Helix 6	AA6	B	207	211	Right-handed 310
Helix 7	AA7	B	241	255	Right-handed alpha
Helix 8	AA8	B	256	260	Right-handed 310
Helix 9	AA9	B	270	279	Right-handed alpha
Helix 10	AB1	B	295	307	Right-handed alpha
Helix 11	AB2	B	330	351	Right-handed alpha
Helix 12	AB3	C	8	38	Right-handed alpha
Helix 13	AB4	C	42	61	Right-handed alpha
Helix 14	AB5	C	61	68	Right-handed alpha
Helix 15	AB6	C	78	113	Right-handed alpha
Helix 16	AB7	C	113	120	Right-handed alpha
Helix 17	AB8	C	122	152	Right-handed alpha
Helix 18	AB9	C	172	188	Right-handed alpha
Helix 19	AC1	C	188	208	Right-handed alpha
Helix 20	AC2	C	213	235	Right-handed alpha
Helix 21	AC3	C	235	249	Right-handed alpha
Helix 22	AC4	C	254	273	Right-handed alpha
Helix 23	AC5	C	276	291	Right-handed alpha
Helix 24	AC6	D	2	20	Right-handed alpha
Helix 25	AC7	D	25	40	Right-handed alpha
Helix 26	AC8	D	41	44	Right-handed 310
Helix 27	AC9	F	87	91	Right-handed 310
Helix 28	AD1	F	206	210	Right-handed 310

There are 13 sheets in PDB entry 8J22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	334	338	anti-parallel
Strand 3	A	325	329	anti-parallel
Strand 4	A	313	318	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	76	81	anti-parallel
Strand 4	A	86	92	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	109	114	anti-parallel
Strand 3	A	119	123	anti-parallel
Strand 4	A	132	137	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	149	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	163	168	anti-parallel
Strand 4	A	174	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	205	210	anti-parallel
Strand 4	A	216	221	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	232	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	247	252	anti-parallel
Strand 4	A	257	263	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	282	286	anti-parallel
Strand 3	A	292	296	anti-parallel
Strand 4	A	302	306	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	33	38	parallel
Strand 4	B	220	226	parallel
Strand 5	B	263	269	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	119	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	93	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	128	first strand
Strand 2	F	141	147	anti-parallel
Strand 3	F	197	202	anti-parallel
Strand 4	F	189	194	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	229	233	parallel
Strand 3	F	211	216	anti-parallel
Strand 4	F	161	165	anti-parallel
Strand 5	F	172	176	anti-parallel
Strand 6	F	180	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J22

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J22