Analysis of interatomic Contacts of Structural Units in PDB entry:
8J23

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J23 entry

There are 5 chains in PDB entry 8J23 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	PHE 274
B	LEU 5	PHE 354
C	GLU 1	SER 340
D	ASN 1	PHE 57
F	ASP 1	ALA 235

There are 24 helices in PDB entry 8J23. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	38	Right-handed alpha
Helix 2	AA2	A	42	61	Right-handed alpha
Helix 3	AA3	A	61	71	Right-handed alpha
Helix 4	AA4	A	78	110	Right-handed alpha
Helix 5	AA5	A	114	119	Right-handed alpha
Helix 6	AA6	A	122	148	Right-handed alpha
Helix 7	AA7	A	171	204	Right-handed alpha
Helix 8	AA8	A	212	247	Right-handed alpha
Helix 9	AA9	A	253	274	Right-handed alpha
Helix 10	AB1	B	6	32	Right-handed alpha
Helix 11	AB2	B	45	53	Right-handed alpha
Helix 12	AB3	B	207	216	Right-handed 310
Helix 13	AB4	B	241	255	Right-handed alpha
Helix 14	AB5	B	256	260	Right-handed 310
Helix 15	AB6	B	270	279	Right-handed alpha
Helix 16	AB7	B	282	286	Right-handed 310
Helix 17	AB8	B	296	309	Right-handed alpha
Helix 18	AB9	B	330	350	Right-handed alpha
Helix 19	AC1	C	2	24	Right-handed alpha
Helix 20	AC2	C	27	32	Right-handed alpha
Helix 21	AC3	D	2	20	Right-handed alpha
Helix 22	AC4	D	25	40	Right-handed alpha
Helix 23	AC5	F	28	32	Right-handed 310
Helix 24	AC6	F	87	91	Right-handed 310

There are 14 sheets in PDB entry 8J23. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	195	200	anti-parallel
Strand 3	B	33	38	parallel
Strand 4	B	220	226	parallel
Strand 5	B	263	269	parallel
Strand 6	B	319	324	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	49	first strand
Strand 2	C	334	338	anti-parallel
Strand 3	C	325	329	anti-parallel
Strand 4	C	313	318	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	61	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	87	92	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	109	114	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	133	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	149	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	164	168	anti-parallel
Strand 4	C	173	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	196	201	anti-parallel
Strand 3	C	205	210	anti-parallel
Strand 4	C	216	221	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	232	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	248	252	anti-parallel
Strand 4	C	258	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	282	287	anti-parallel
Strand 3	C	291	296	anti-parallel
Strand 4	C	302	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	115	118	parallel
Strand 3	F	93	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	115	118	parallel
Strand 3	F	93	99	anti-parallel
Strand 4	F	110	111	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	135	first strand
Strand 2	F	230	233	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	146	first strand
Strand 2	F	197	202	anti-parallel
Strand 3	F	189	193	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	181	first strand
Strand 2	F	172	176	anti-parallel
Strand 3	F	160	165	anti-parallel
Strand 4	F	212	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J23

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J23