Analysis of interatomic Contacts of Structural Units in PDB entry:
8J24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J24 entry

There are 5 chains in PDB entry 8J24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1	SER 340
C	SER 6	PHE 354
D	ASP 4	PHE 275
F	ASN 1	PHE 57
G	ASP 1	ALA 250

There are 28 helices in PDB entry 8J24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	23	Right-handed alpha
Helix 2	AA2	B	27	33	Right-handed alpha
Helix 3	AA3	C	8	32	Right-handed alpha
Helix 4	AA4	C	45	52	Right-handed alpha
Helix 5	AA5	C	207	216	Right-handed 310
Helix 6	AA6	C	228	232	Right-handed 310
Helix 7	AA7	C	241	255	Right-handed alpha
Helix 8	AA8	C	256	260	Right-handed 310
Helix 9	AA9	C	270	279	Right-handed alpha
Helix 10	AB1	C	282	286	Right-handed 310
Helix 11	AB2	C	295	309	Right-handed alpha
Helix 12	AB3	C	330	351	Right-handed alpha
Helix 13	AB4	D	5	38	Right-handed alpha
Helix 14	AB5	D	42	61	Right-handed alpha
Helix 15	AB6	D	61	71	Right-handed alpha
Helix 16	AB7	D	78	113	Right-handed alpha
Helix 17	AB8	D	113	121	Right-handed alpha
Helix 18	AB9	D	122	141	Right-handed alpha
Helix 19	AC1	D	142	148	Right-handed alpha
Helix 20	AC2	D	172	188	Right-handed alpha
Helix 21	AC3	D	188	209	Right-handed alpha
Helix 22	AC4	D	213	249	Right-handed alpha
Helix 23	AC5	D	254	273	Right-handed alpha
Helix 24	AC6	F	2	20	Right-handed alpha
Helix 25	AC7	F	25	40	Right-handed alpha
Helix 26	AC8	F	51	55	Right-handed 310
Helix 27	AC9	G	87	91	Right-handed 310
Helix 28	AD1	G	221	225	Right-handed 310

There are 12 sheets in PDB entry 8J24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	49	first strand
Strand 2	B	334	339	anti-parallel
Strand 3	B	325	328	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	76	81	anti-parallel
Strand 4	B	87	92	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	109	114	anti-parallel
Strand 3	B	119	123	anti-parallel
Strand 4	B	132	137	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	154	159	anti-parallel
Strand 3	B	164	168	anti-parallel
Strand 4	B	174	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	215	221	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	248	252	anti-parallel
Strand 4	B	257	262	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	276	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	292	296	anti-parallel
Strand 4	B	302	306	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	191	first strand
Strand 2	C	194	200	anti-parallel
Strand 3	C	34	38	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	143	first strand
Strand 2	G	156	162	anti-parallel
Strand 3	G	212	217	anti-parallel
Strand 4	G	204	209	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	150	first strand
Strand 2	G	244	248	parallel
Strand 3	G	226	232	anti-parallel
Strand 4	G	175	180	anti-parallel
Strand 5	G	186	191	anti-parallel
Strand 6	G	195	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J24

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J24