Analysis of interatomic Contacts of Structural Units in PDB entry:
8J25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J25 entry

There is 1 chain in PDB entry 8J25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE -188CYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8J25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-174 -158Right-handed alpha
Helix 2
AA2
A
-148 -139Right-handed alpha
Helix 3
AA3
A
-138 -136Right-handed 310
Helix 4
AA4
A
-124 -117Right-handed alpha
Helix 5
AA5
A
-108 -103Right-handed alpha
Helix 6
AA6
A
-100 -93Right-handed alpha
Helix 7
AA7
A
-59 -49Right-handed alpha
Helix 8
AA8
A
-37 -26Right-handed alpha
Helix 9
AA9
A
-5 11Right-handed alpha
Helix 10
AB1
A
19 29Right-handed alpha
Helix 11
AB2
A
38 40Right-handed 310
Helix 12
AB3
A
41 48Right-handed alpha
Helix 13
AB4
A
82 93Right-handed alpha
Helix 14
AB5
A
96 105Right-handed alpha
Helix 15
AB6
A
114 122Right-handed alpha
Helix 16
AB7
A
124 137Right-handed alpha
Helix 17
AB8
A
145 163Right-handed alpha
Helix 18
AB9
A
166 182Right-handed alpha
Helix 19
AC1
A
212 219Right-handed alpha
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There are 6 sheets in PDB entry 8J25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-155 -152first strand
Strand 2
A
-183 -180parallel
Strand 3
A
-131 -127parallel
Strand 4
A
68 76anti-parallel
Strand 5
A
-84 -79anti-parallel
Strand 6
A
111 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-155 -152first strand
Strand 2
A
-183 -180parallel
Strand 3
A
-131 -127parallel
Strand 4
A
68 76anti-parallel
Strand 5
A
138 139parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-92 -91first strand
Strand 2
A
-88 -87anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-45 -43first strand
Strand 2
A
32 37parallel
Strand 3
A
-76 -72anti-parallel
Strand 4
A
52 55anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-23 -19first strand
Strand 2
A
-15 -8anti-parallel
Strand 3
A
202 204anti-parallel
Strand 4
A
209 210anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
199 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il