Analysis of interatomic Contacts of Structural Units in PDB entry:
8J28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J28 entry

There are 4 chains in PDB entry 8J28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 TYR 72PRO 86
A
 ARG 69LYS 85
C
 SER 7TRP 287
E
 ARG 71LYS 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8J28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
72 77Right-handed alpha
Helix 2
AA2
F
79 85Right-handed alpha
Helix 3
AA3
A
70 77Right-handed alpha
Helix 4
AA4
A
79 85Right-handed alpha
Helix 5
AA5
C
9 13Right-handed 310
Helix 6
AA6
C
34 52Right-handed alpha
Helix 7
AA7
C
61 77Right-handed alpha
Helix 8
AA8
C
80 84Right-handed 310
Helix 9
AA9
C
91 114Right-handed alpha
Helix 10
AB1
C
124 128Right-handed 310
Helix 11
AB2
C
131 147Right-handed alpha
Helix 12
AB3
C
175 188Right-handed alpha
Helix 13
AB4
C
218 223Right-handed alpha
Helix 14
AB5
C
224 226Right-handed 310
Helix 15
AB6
C
238 251Right-handed alpha
Helix 16
AB7
C
265 272Right-handed alpha
Helix 17
AB8
E
72 78Right-handed alpha
Helix 18
AB9
E
79 84Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8J28.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 123first strand
Strand 2
C
150 155parallel
Strand 3
C
54 59parallel
Strand 4
C
16 21parallel
Strand 5
C
191 196parallel
Strand 6
C
256 260parallel
Strand 7
C
278 280anti-parallel
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