Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2B entry

There is 1 chain in PDB entry 8J2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 562VAL 1219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8J2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
562 566Right-handed 310
Helix 2
AA2
A
582 595Right-handed alpha
Helix 3
AA3
A
605 624Right-handed alpha
Helix 4
AA4
A
627 630Right-handed 310
Helix 5
AA5
A
642 658Right-handed alpha
Helix 6
AA6
A
675 679Right-handed 310
Helix 7
AA7
A
680 692Right-handed alpha
Helix 8
AA8
A
692 710Right-handed alpha
Helix 9
AA9
A
719 723Right-handed 310
Helix 10
AB1
A
734 756Right-handed alpha
Helix 11
AB2
A
771 776Right-handed alpha
Helix 12
AB3
A
782 811Right-handed alpha
Helix 13
AB4
A
814 821Right-handed alpha
Helix 14
AB5
A
826 832Right-handed alpha
Helix 15
AB6
A
837 850Right-handed alpha
Helix 16
AB7
A
855 859Right-handed 310
Helix 17
AB8
A
863 877Right-handed alpha
Helix 18
AB9
A
898 917Right-handed alpha
Helix 19
AC1
A
924 937Right-handed alpha
Helix 20
AC2
A
968 974Right-handed alpha
Helix 21
AC3
A
987 1001Right-handed alpha
Helix 22
AC4
A
1013 1024Right-handed alpha
Helix 23
AC5
A
1024 1030Right-handed alpha
Helix 24
AC6
A
1041 1054Right-handed alpha
Helix 25
AC7
A
1085 1097Right-handed alpha
Helix 26
AC8
A
1097 1108Right-handed alpha
Helix 27
AC9
A
1127 1154Right-handed alpha
Helix 28
AD1
A
1170 1174Right-handed 310
Helix 29
AD2
A
1177 1197Right-handed alpha
Helix 30
AD3
A
1208 1212Right-handed alpha
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There are 3 sheets in PDB entry 8J2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 635first strand
Strand 2
A
598 602parallel
Strand 3
A
574 578parallel
Strand 4
A
662 665parallel
Strand 5
A
712 717parallel
Strand 6
A
759 764parallel
Strand 7
A
945 946parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 728first strand
Strand 2
A
957 958anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1006 1011parallel
Strand 3
A
979 983parallel
Strand 4
A
1058 1061parallel
Strand 5
A
1114 1118parallel
Strand 6
A
1160 1165parallel
Strand 7
A
1216 1218parallel
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