Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2F entry

There are 2 chains in PDB entry 8J2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ASP 401
B
 PRO 3ASP 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8J2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
52 63Right-handed alpha
Helix 3
AA3
A
110 115Right-handed 310
Helix 4
AA4
A
148 167Right-handed alpha
Helix 5
AA5
A
185 196Right-handed alpha
Helix 6
AA6
A
200 204Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
302 348Right-handed alpha
Helix 9
AA9
A
353 401Right-handed alpha
Helix 10
AB1
B
25 41Right-handed alpha
Helix 11
AB2
B
52 63Right-handed alpha
Helix 12
AB3
B
110 115Right-handed 310
Helix 13
AB4
B
148 167Right-handed alpha
Helix 14
AB5
B
185 196Right-handed alpha
Helix 15
AB6
B
200 204Right-handed alpha
Helix 16
AB7
B
210 214Right-handed 310
Helix 17
AB8
B
302 348Right-handed alpha
Helix 18
AB9
B
353 401Right-handed alpha
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There are 4 sheets in PDB entry 8J2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
6 18parallel
Strand 5
A
275 283anti-parallel
Strand 6
A
248 257anti-parallel
Strand 7
A
206 208parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
117 125anti-parallel
Strand 3
A
128 136anti-parallel
Strand 4
A
172 178parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
198 199anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
44 50anti-parallel
Strand 4
B
6 18parallel
Strand 5
B
275 283anti-parallel
Strand 6
B
248 257anti-parallel
Strand 7
B
206 208parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
117 125anti-parallel
Strand 3
B
128 136anti-parallel
Strand 4
B
172 178parallel
Strand 5
B
238 244anti-parallel
Strand 6
B
198 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il