Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2G entry

There are 2 chains in PDB entry 8J2G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 422
B
 MET 1ALA 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8J2G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 32Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
48 51Right-handed 310
Helix 4
AA4
A
52 61Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
94 100Right-handed alpha
Helix 7
AA7
A
101 106Right-handed alpha
Helix 8
AA8
A
116 125Right-handed alpha
Helix 9
AA9
A
126 131Right-handed alpha
Helix 10
AB1
A
249 254Right-handed alpha
Helix 11
AB2
A
260 272Right-handed alpha
Helix 12
AB3
A
311 315Right-handed 310
Helix 13
AB4
A
316 324Right-handed alpha
Helix 14
AB5
A
324 332Right-handed alpha
Helix 15
AB6
A
332 339Right-handed alpha
Helix 16
AB7
A
352 355Right-handed 310
Helix 17
AB8
A
356 361Right-handed alpha
Helix 18
AB9
A
398 409Right-handed alpha
Helix 19
AC1
B
11 32Right-handed alpha
Helix 20
AC2
B
42 46Right-handed 310
Helix 21
AC3
B
48 51Right-handed 310
Helix 22
AC4
B
52 61Right-handed alpha
Helix 23
AC5
B
80 85Right-handed alpha
Helix 24
AC6
B
94 100Right-handed alpha
Helix 25
AC7
B
101 106Right-handed alpha
Helix 26
AC8
B
116 125Right-handed alpha
Helix 27
AC9
B
126 131Right-handed alpha
Helix 28
AD1
B
249 254Right-handed alpha
Helix 29
AD2
B
260 272Right-handed alpha
Helix 30
AD3
B
311 315Right-handed 310
Helix 31
AD4
B
316 324Right-handed alpha
Helix 32
AD5
B
324 332Right-handed alpha
Helix 33
AD6
B
332 339Right-handed alpha
Helix 34
AD7
B
352 355Right-handed 310
Helix 35
AD8
B
356 361Right-handed alpha
Helix 36
AD9
B
398 409Right-handed alpha
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There are 2 sheets in PDB entry 8J2G. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 376first strand
Strand 2
A
382 389anti-parallel
Strand 3
A
414 419parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 376first strand
Strand 2
B
382 389anti-parallel
Strand 3
B
414 419parallel
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