Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2N entry

There are 2 chains in PDB entry 8J2N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 201LYS 510
B
 PHE 201LYS 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8J2N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 257Right-handed alpha
Helix 2
AA2
A
285 289Right-handed 310
Helix 3
AA3
A
292 296Right-handed 310
Helix 4
AA4
A
300 306Right-handed alpha
Helix 5
AA5
A
307 311Right-handed 310
Helix 6
AA6
A
332 336Right-handed 310
Helix 7
AA7
A
396 406Right-handed alpha
Helix 8
AA8
A
406 415Right-handed alpha
Helix 9
AA9
A
429 438Right-handed alpha
Helix 10
AB1
A
456 470Right-handed alpha
Helix 11
AB2
A
486 502Right-handed alpha
Helix 12
AB3
B
244 257Right-handed alpha
Helix 13
AB4
B
285 289Right-handed 310
Helix 14
AB5
B
292 296Right-handed 310
Helix 15
AB6
B
300 306Right-handed alpha
Helix 16
AB7
B
307 311Right-handed 310
Helix 17
AB8
B
332 336Right-handed 310
Helix 18
AB9
B
366 380Right-handed alpha
Helix 19
AC1
B
396 406Right-handed alpha
Helix 20
AC2
B
406 415Right-handed alpha
Helix 21
AC3
B
429 438Right-handed alpha
Helix 22
AC4
B
456 461Right-handed alpha
Helix 23
AC5
B
461 470Right-handed alpha
Helix 24
AC6
B
486 502Right-handed alpha
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There are 6 sheets in PDB entry 8J2N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
263 266parallel
Strand 3
A
203 208parallel
Strand 4
A
317 321parallel
Strand 5
A
392 395anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
474 478anti-parallel
Strand 3
A
449 453parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
441 443parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 284first strand
Strand 2
B
263 266parallel
Strand 3
B
203 208parallel
Strand 4
B
317 321parallel
Strand 5
B
392 395anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 327first strand
Strand 2
B
474 477anti-parallel
Strand 3
B
449 452parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
441 443parallel
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