Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2V entry

There is 1 chain in PDB entry 8J2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8J2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
85 97Right-handed alpha
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
120 123Right-handed 310
Helix 7
AA7
A
124 132Right-handed alpha
Helix 8
AA8
A
142 159Right-handed alpha
Helix 9
AA9
A
162 166Right-handed 310
Helix 10
AB1
A
179 183Right-handed 310
Helix 11
AB2
A
184 188Right-handed 310
Helix 12
AB3
A
192 207Right-handed alpha
Helix 13
AB4
A
220 230Right-handed alpha
Helix 14
AB5
A
230 235Right-handed alpha
Helix 15
AB6
A
257 265Right-handed alpha
Helix 16
AB7
A
283 298Right-handed alpha
Helix 17
AB8
A
327 332Right-handed 310
Helix 18
AB9
A
335 340Right-handed alpha
Helix 19
AC1
A
352 358Right-handed alpha
Helix 20
AC2
A
370 379Right-handed alpha
Helix 21
AC3
A
392 403Right-handed alpha
Helix 22
AC4
A
420 433Right-handed alpha
Helix 23
AC5
A
434 456Right-handed alpha
Helix 24
AC6
A
459 475Right-handed alpha
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There are 2 sheets in PDB entry 8J2V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
35 43parallel
Strand 3
A
6 12parallel
Strand 4
A
114 118parallel
Strand 5
A
134 139parallel
Strand 6
A
211 213parallel
Strand 7
A
241 243parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
300 305parallel
Strand 3
A
271 274parallel
Strand 4
A
362 367parallel
Strand 5
A
384 386parallel
Strand 6
A
407 408parallel
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