Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2W entry

There are 2 chains in PDB entry 8J2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7HIS 345
B
 ASP 7HIS 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8J2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
24 38Right-handed alpha
Helix 3
AA3
A
41 49Right-handed alpha
Helix 4
AA4
A
49 63Right-handed alpha
Helix 5
AA5
A
67 90Right-handed alpha
Helix 6
AA6
A
108 122Right-handed alpha
Helix 7
AA7
A
134 146Right-handed alpha
Helix 8
AA8
A
156 158Right-handed 310
Helix 9
AA9
A
159 173Right-handed alpha
Helix 10
AB1
A
181 185Right-handed 310
Helix 11
AB2
A
188 195Right-handed alpha
Helix 12
AB3
A
202 211Right-handed alpha
Helix 13
AB4
A
228 237Right-handed alpha
Helix 14
AB5
A
237 253Right-handed alpha
Helix 15
AB6
A
254 259Right-handed 310
Helix 16
AB7
A
260 285Right-handed alpha
Helix 17
AB8
A
286 304Right-handed alpha
Helix 18
AB9
A
308 322Right-handed alpha
Helix 19
AC1
A
325 344Right-handed alpha
Helix 20
AC2
B
8 23Right-handed alpha
Helix 21
AC3
B
24 38Right-handed alpha
Helix 22
AC4
B
41 49Right-handed alpha
Helix 23
AC5
B
49 63Right-handed alpha
Helix 24
AC6
B
67 90Right-handed alpha
Helix 25
AC7
B
109 122Right-handed alpha
Helix 26
AC8
B
134 146Right-handed alpha
Helix 27
AC9
B
156 158Right-handed 310
Helix 28
AD1
B
159 173Right-handed alpha
Helix 29
AD2
B
181 187Right-handed 310
Helix 30
AD3
B
188 195Right-handed alpha
Helix 31
AD4
B
202 211Right-handed alpha
Helix 32
AD5
B
228 237Right-handed alpha
Helix 33
AD6
B
237 253Right-handed alpha
Helix 34
AD7
B
254 259Right-handed 310
Helix 35
AD8
B
260 285Right-handed alpha
Helix 36
AD9
B
286 304Right-handed alpha
Helix 37
AE1
B
308 322Right-handed alpha
Helix 38
AE2
B
325 344Right-handed alpha
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There are 2 sheets in PDB entry 8J2W. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 133first strand
Strand 2
A
97 103parallel
Strand 3
A
149 153parallel
Strand 4
A
177 180parallel
Strand 5
A
198 199parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 133first strand
Strand 2
B
97 103parallel
Strand 3
B
149 153parallel
Strand 4
B
177 180parallel
Strand 5
B
198 199parallel
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