Analysis of interatomic Contacts of Structural Units in PDB entry:
8J2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J2Y entry

There are 2 chains in PDB entry 8J2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2TRP 332
B
 GLU 2ALA 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8J2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 6Right-handed 310
Helix 2
AA2
A
7 16Right-handed alpha
Helix 3
AA3
A
19 33Right-handed alpha
Helix 4
AA4
A
36 44Right-handed alpha
Helix 5
AA5
A
44 58Right-handed alpha
Helix 6
AA6
A
62 82Right-handed alpha
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
129 141Right-handed alpha
Helix 9
AA9
A
151 153Right-handed 310
Helix 10
AB1
A
154 167Right-handed alpha
Helix 11
AB2
A
176 180Right-handed 310
Helix 12
AB3
A
183 189Right-handed alpha
Helix 13
AB4
A
197 211Right-handed alpha
Helix 14
AB5
A
223 232Right-handed alpha
Helix 15
AB6
A
232 243Right-handed alpha
Helix 16
AB7
A
255 279Right-handed alpha
Helix 17
AB8
A
282 298Right-handed alpha
Helix 18
AB9
A
303 321Right-handed alpha
Helix 19
AC1
A
324 331Right-handed alpha
Helix 20
AC2
B
3 6Right-handed 310
Helix 21
AC3
B
7 16Right-handed alpha
Helix 22
AC4
B
19 33Right-handed alpha
Helix 23
AC5
B
36 44Right-handed alpha
Helix 24
AC6
B
44 58Right-handed alpha
Helix 25
AC7
B
62 82Right-handed alpha
Helix 26
AC8
B
103 117Right-handed alpha
Helix 27
AC9
B
129 141Right-handed alpha
Helix 28
AD1
B
151 153Right-handed 310
Helix 29
AD2
B
154 167Right-handed alpha
Helix 30
AD3
B
176 180Right-handed 310
Helix 31
AD4
B
183 189Right-handed alpha
Helix 32
AD5
B
197 211Right-handed alpha
Helix 33
AD6
B
223 232Right-handed alpha
Helix 34
AD7
B
232 243Right-handed alpha
Helix 35
AD8
B
255 279Right-handed alpha
Helix 36
AD9
B
282 298Right-handed alpha
Helix 37
AE1
B
303 321Right-handed alpha
Helix 38
AE2
B
324 329Right-handed alpha
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There are 2 sheets in PDB entry 8J2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
92 97parallel
Strand 3
A
144 148parallel
Strand 4
A
172 175parallel
Strand 5
A
193 194parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
92 97parallel
Strand 3
B
144 148parallel
Strand 4
B
172 175parallel
Strand 5
B
193 194parallel
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