Analysis of interatomic Contacts of Structural Units in PDB entry:
8J30


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J30 entry

There are 2 chains in PDB entry 8J30 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 619
B
 ASN 5GLU 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8J30. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
50 54Right-handed 310
Helix 4
AA4
A
56 78Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
94 104Right-handed alpha
Helix 7
AA7
A
110 115Right-handed alpha
Helix 8
AA8
A
116 118Right-handed 310
Helix 9
AA9
A
134 144Right-handed alpha
Helix 10
AB1
A
154 162Right-handed alpha
Helix 11
AB2
A
162 173Right-handed alpha
Helix 12
AB3
A
181 200Right-handed alpha
Helix 13
AB4
A
209 211Right-handed 310
Helix 14
AB5
A
212 220Right-handed alpha
Helix 15
AB6
A
221 223Right-handed 310
Helix 16
AB7
A
229 247Right-handed alpha
Helix 17
AB8
A
277 290Right-handed alpha
Helix 18
AB9
A
291 293Right-handed 310
Helix 19
AC1
A
305 310Right-handed alpha
Helix 20
AC2
A
322 338Right-handed alpha
Helix 21
AC3
A
350 357Right-handed alpha
Helix 22
AC4
A
388 390Right-handed 310
Helix 23
AC5
A
392 396Right-handed 310
Helix 24
AC6
A
440 442Right-handed 310
Helix 25
AC7
A
443 457Right-handed alpha
Helix 26
AC8
A
473 487Right-handed alpha
Helix 27
AC9
A
497 507Right-handed alpha
Helix 28
AD1
A
520 529Right-handed alpha
Helix 29
AD2
A
540 554Right-handed alpha
Helix 30
AD3
A
563 577Right-handed alpha
Helix 31
AD4
A
577 592Right-handed alpha
Helix 32
AD5
A
593 598Right-handed alpha
Helix 33
AD6
A
603 619Right-handed alpha
Helix 34
AD7
B
8 18Right-handed alpha
Helix 35
AD8
B
20 38Right-handed alpha
Helix 36
AD9
B
50 54Right-handed 310
Helix 37
AE1
B
56 78Right-handed alpha
Helix 38
AE2
B
84 94Right-handed alpha
Helix 39
AE3
B
94 104Right-handed alpha
Helix 40
AE4
B
110 115Right-handed alpha
Helix 41
AE5
B
134 144Right-handed alpha
Helix 42
AE6
B
154 160Right-handed alpha
Helix 43
AE7
B
162 173Right-handed alpha
Helix 44
AE8
B
181 200Right-handed alpha
Helix 45
AE9
B
209 211Right-handed 310
Helix 46
AF1
B
212 220Right-handed alpha
Helix 47
AF2
B
221 223Right-handed 310
Helix 48
AF3
B
229 246Right-handed alpha
Helix 49
AF4
B
277 290Right-handed alpha
Helix 50
AF5
B
291 293Right-handed 310
Helix 51
AF6
B
305 311Right-handed alpha
Helix 52
AF7
B
322 337Right-handed alpha
Helix 53
AF8
B
350 357Right-handed alpha
Helix 54
AF9
B
388 390Right-handed 310
Helix 55
AG1
B
392 396Right-handed 310
Helix 56
AG2
B
443 457Right-handed alpha
Helix 57
AG3
B
473 486Right-handed alpha
Helix 58
AG4
B
497 507Right-handed alpha
Helix 59
AG5
B
520 529Right-handed alpha
Helix 60
AG6
B
540 554Right-handed alpha
Helix 61
AG7
B
556 558Right-handed 310
Helix 62
AG8
B
563 577Right-handed alpha
Helix 63
AG9
B
577 592Right-handed alpha
Helix 64
AH1
B
603 618Right-handed alpha
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There are 6 sheets in PDB entry 8J30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
263 269anti-parallel
Strand 3
A
295 300parallel
Strand 4
A
314 317parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
263 269anti-parallel
Strand 3
A
341 344parallel
Strand 4
A
364 368parallel
Strand 5
A
382 386parallel
Strand 6
A
399 403parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 493first strand
Strand 2
A
460 468parallel
Strand 3
A
430 438parallel
Strand 4
A
510 512parallel
Strand 5
A
533 536parallel
Strand 6
A
560 561parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
263 269anti-parallel
Strand 3
B
295 300parallel
Strand 4
B
314 317parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
263 269anti-parallel
Strand 3
B
339 344parallel
Strand 4
B
364 368parallel
Strand 5
B
382 386parallel
Strand 6
B
399 403parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 493first strand
Strand 2
B
461 466parallel
Strand 3
B
431 435parallel
Strand 4
B
510 512parallel
Strand 5
B
533 536parallel
Strand 6
B
560 561parallel
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