Analysis of interatomic Contacts of Structural Units in PDB entry:
8J31


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J31 entry

There is 1 chain in PDB entry 8J31 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ARG 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8J31. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 34Right-handed alpha
Helix 2
AA2
A
85 94Right-handed alpha
Helix 3
AA3
A
97 107Right-handed alpha
Helix 4
AA4
A
121 123Right-handed 310
Helix 5
AA5
A
124 131Right-handed alpha
Helix 6
AA6
A
142 159Right-handed alpha
Helix 7
AA7
A
184 188Right-handed 310
Helix 8
AA8
A
192 205Right-handed alpha
Helix 9
AA9
A
206 208Right-handed 310
Helix 10
AB1
A
220 230Right-handed alpha
Helix 11
AB2
A
230 235Right-handed alpha
Helix 12
AB3
A
257 264Right-handed alpha
Helix 13
AB4
A
283 297Right-handed alpha
Helix 14
AB5
A
327 332Right-handed alpha
Helix 15
AB6
A
335 341Right-handed alpha
Helix 16
AB7
A
352 359Right-handed alpha
Helix 17
AB8
A
370 379Right-handed alpha
Helix 18
AB9
A
392 402Right-handed alpha
Helix 19
AC1
A
420 434Right-handed alpha
Helix 20
AC2
A
434 455Right-handed alpha
Helix 21
AC3
A
459 475Right-handed alpha
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There are 3 sheets in PDB entry 8J31. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
35 39parallel
Strand 3
A
6 11parallel
Strand 4
A
114 117parallel
Strand 5
A
134 139parallel
Strand 6
A
211 213parallel
Strand 7
A
241 243parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
177 178anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
300 305parallel
Strand 3
A
271 275parallel
Strand 4
A
362 367parallel
Strand 5
A
384 386parallel
Strand 6
A
407 408parallel
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