Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3G entry

There is 1 chain in PDB entry 8J3G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7TYR 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8J3G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
19 33Right-handed alpha
Helix 3
AA3
A
34 43Right-handed alpha
Helix 4
AA4
A
48 54Right-handed alpha
Helix 5
AA5
A
61 75Right-handed alpha
Helix 6
AA6
A
93 99Right-handed 310
Helix 7
AA7
A
106 114Right-handed alpha
Helix 8
AA8
A
115 120Right-handed alpha
Helix 9
AA9
A
121 125Right-handed 310
Helix 10
AB1
A
126 130Right-handed 310
Helix 11
AB2
A
135 142Right-handed alpha
Helix 12
AB3
A
159 178Right-handed alpha
Helix 13
AB4
A
179 183Right-handed 310
Helix 14
AB5
A
198 206Right-handed alpha
Helix 15
AB6
A
233 237Right-handed alpha
Helix 16
AB7
A
251 255Right-handed 310
Helix 17
AB8
A
256 271Right-handed alpha
Helix 18
AB9
A
293 308Right-handed alpha
Helix 19
AC1
A
315 325Right-handed alpha
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There are 3 sheets in PDB entry 8J3G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
78 83anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
187 191parallel
Strand 3
A
245 249parallel
Strand 4
A
277 282parallel
Strand 5
A
340 345anti-parallel
Strand 6
A
329 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
313 314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il