Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3I entry

There is 1 chain in PDB entry 8J3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ILE 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8J3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed 310
Helix 2
AA2
A
16 31Right-handed alpha
Helix 3
AA3
A
32 39Right-handed alpha
Helix 4
AA4
A
47 55Right-handed alpha
Helix 5
AA5
A
61 76Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
108 116Right-handed alpha
Helix 8
AA8
A
117 124Right-handed alpha
Helix 9
AA9
A
127 133Right-handed alpha
Helix 10
AB1
A
137 144Right-handed alpha
Helix 11
AB2
A
146 154Right-handed alpha
Helix 12
AB3
A
154 180Right-handed alpha
Helix 13
AB4
A
197 207Right-handed alpha
Helix 14
AB5
A
252 256Right-handed 310
Helix 15
AB6
A
257 272Right-handed alpha
Helix 16
AB7
A
292 309Right-handed alpha
Helix 17
AB8
A
316 328Right-handed alpha
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There are 2 sheets in PDB entry 8J3I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
88 92anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
211 216parallel
Strand 3
A
188 192parallel
Strand 4
A
247 250parallel
Strand 5
A
277 283parallel
Strand 6
A
341 347anti-parallel
Strand 7
A
331 336anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il