Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3O entry

There are 4 chains in PDB entry 8J3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2TYR 373
B
 GLY 2GLY 374
C
 GLY 2ALA 369
D
 GLY 2TYR 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 8J3O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
29 32Right-handed 310
Helix 3
AA3
A
33 40Right-handed alpha
Helix 4
AA4
A
56 61Right-handed alpha
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
103 110Right-handed alpha
Helix 7
AA7
A
121 138Right-handed alpha
Helix 8
AA8
A
139 149Right-handed alpha
Helix 9
AA9
A
153 159Right-handed alpha
Helix 10
AB1
A
175 186Right-handed alpha
Helix 11
AB2
A
187 189Right-handed 310
Helix 12
AB3
A
202 218Right-handed alpha
Helix 13
AB4
A
228 236Right-handed alpha
Helix 14
AB5
A
254 259Right-handed alpha
Helix 15
AB6
A
272 276Right-handed 310
Helix 16
AB7
A
277 287Right-handed alpha
Helix 17
AB8
A
306 310Right-handed 310
Helix 18
AB9
A
327 330Right-handed 310
Helix 19
AC1
A
331 351Right-handed alpha
Helix 20
AC2
A
357 359Right-handed 310
Helix 21
AC3
B
13 19Right-handed 310
Helix 22
AC4
B
29 32Right-handed 310
Helix 23
AC5
B
33 40Right-handed alpha
Helix 24
AC6
B
56 61Right-handed alpha
Helix 25
AC7
B
79 85Right-handed alpha
Helix 26
AC8
B
103 110Right-handed alpha
Helix 27
AC9
B
121 138Right-handed alpha
Helix 28
AD1
B
139 149Right-handed alpha
Helix 29
AD2
B
153 159Right-handed alpha
Helix 30
AD3
B
175 186Right-handed alpha
Helix 31
AD4
B
187 189Right-handed 310
Helix 32
AD5
B
202 218Right-handed alpha
Helix 33
AD6
B
228 236Right-handed alpha
Helix 34
AD7
B
254 259Right-handed alpha
Helix 35
AD8
B
272 276Right-handed 310
Helix 36
AD9
B
277 287Right-handed alpha
Helix 37
AE1
B
306 310Right-handed 310
Helix 38
AE2
B
327 330Right-handed 310
Helix 39
AE3
B
331 351Right-handed alpha
Helix 40
AE4
B
357 359Right-handed 310
Helix 41
AE5
C
14 19Right-handed alpha
Helix 42
AE6
C
29 32Right-handed 310
Helix 43
AE7
C
33 40Right-handed alpha
Helix 44
AE8
C
56 61Right-handed alpha
Helix 45
AE9
C
79 85Right-handed alpha
Helix 46
AF1
C
103 110Right-handed alpha
Helix 47
AF2
C
121 138Right-handed alpha
Helix 48
AF3
C
139 149Right-handed alpha
Helix 49
AF4
C
153 159Right-handed alpha
Helix 50
AF5
C
175 186Right-handed alpha
Helix 51
AF6
C
187 189Right-handed 310
Helix 52
AF7
C
202 218Right-handed alpha
Helix 53
AF8
C
228 236Right-handed alpha
Helix 54
AF9
C
254 259Right-handed alpha
Helix 55
AG1
C
272 276Right-handed 310
Helix 56
AG2
C
277 287Right-handed alpha
Helix 57
AG3
C
306 310Right-handed 310
Helix 58
AG4
C
327 330Right-handed 310
Helix 59
AG5
C
331 351Right-handed alpha
Helix 60
AG6
C
357 359Right-handed 310
Helix 61
AG7
D
14 20Right-handed alpha
Helix 62
AG8
D
29 32Right-handed 310
Helix 63
AG9
D
33 40Right-handed alpha
Helix 64
AH1
D
56 61Right-handed alpha
Helix 65
AH2
D
79 85Right-handed alpha
Helix 66
AH3
D
103 110Right-handed alpha
Helix 67
AH4
D
121 138Right-handed alpha
Helix 68
AH5
D
139 149Right-handed alpha
Helix 69
AH6
D
153 159Right-handed alpha
Helix 70
AH7
D
175 186Right-handed alpha
Helix 71
AH8
D
187 189Right-handed 310
Helix 72
AH9
D
202 218Right-handed alpha
Helix 73
AI1
D
228 236Right-handed alpha
Helix 74
AI2
D
254 260Right-handed alpha
Helix 75
AI3
D
272 276Right-handed 310
Helix 76
AI4
D
277 287Right-handed alpha
Helix 77
AI5
D
306 310Right-handed 310
Helix 78
AI6
D
327 330Right-handed 310
Helix 79
AI7
D
331 351Right-handed alpha
Helix 80
AI8
D
357 359Right-handed 310
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There are 8 sheets in PDB entry 8J3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
5 9parallel
Strand 3
A
65 70parallel
Strand 4
A
91 94parallel
Strand 5
A
113 115parallel
Strand 6
A
361 364anti-parallel
Strand 7
A
367 368anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
192 196parallel
Strand 3
A
168 172parallel
Strand 4
A
238 241parallel
Strand 5
A
265 269parallel
Strand 6
A
290 294parallel
Strand 7
A
321 323parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
5 9parallel
Strand 3
B
65 70parallel
Strand 4
B
91 94parallel
Strand 5
B
113 115parallel
Strand 6
B
361 364anti-parallel
Strand 7
B
367 368anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
192 196parallel
Strand 3
B
168 172parallel
Strand 4
B
238 241parallel
Strand 5
B
265 269parallel
Strand 6
B
290 294parallel
Strand 7
B
321 323parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
5 9parallel
Strand 3
C
65 70parallel
Strand 4
C
91 94parallel
Strand 5
C
113 115parallel
Strand 6
C
361 364anti-parallel
Strand 7
C
367 368anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 225first strand
Strand 2
C
192 196parallel
Strand 3
C
168 172parallel
Strand 4
C
238 241parallel
Strand 5
C
265 269parallel
Strand 6
C
290 294parallel
Strand 7
C
321 323parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 47first strand
Strand 2
D
5 9parallel
Strand 3
D
65 70parallel
Strand 4
D
91 94parallel
Strand 5
D
113 115parallel
Strand 6
D
361 363anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 225first strand
Strand 2
D
192 196parallel
Strand 3
D
168 172parallel
Strand 4
D
238 241parallel
Strand 5
D
265 269parallel
Strand 6
D
290 294parallel
Strand 7
D
321 323parallel
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