Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3R entry

There are 5 chains in PDB entry 8J3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 422
D
 A 3 A 25
E
 T -7 G 0
C
 U -94 C 14
B
 MET 1ILE 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8J3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 57Right-handed alpha
Helix 2
AA2
A
61 66Right-handed alpha
Helix 3
AA3
A
70 80Right-handed alpha
Helix 4
AA4
A
87 105Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
150 157Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
196 199Right-handed 310
Helix 9
AA9
A
247 268Right-handed alpha
Helix 10
AB1
A
269 271Right-handed 310
Helix 11
AB2
A
272 276Right-handed 310
Helix 12
AB3
A
279 284Right-handed alpha
Helix 13
AB4
A
284 316Right-handed alpha
Helix 14
AB5
A
341 356Right-handed alpha
Helix 15
AB6
A
400 409Right-handed alpha
Helix 16
AB7
A
412 420Right-handed alpha
Helix 17
AB8
B
16 46Right-handed alpha
Helix 18
AB9
B
50 56Right-handed alpha
Helix 19
AC1
B
70 81Right-handed alpha
Helix 20
AC2
B
87 105Right-handed alpha
Helix 21
AC3
B
105 112Right-handed alpha
Helix 22
AC4
B
150 157Right-handed alpha
Helix 23
AC5
B
171 183Right-handed alpha
Helix 24
AC6
B
247 265Right-handed alpha
Helix 25
AC7
B
286 317Right-handed alpha
Helix 26
AC8
B
341 356Right-handed alpha
Helix 27
AC9
B
400 410Right-handed alpha
Helix 28
AD1
B
412 420Right-handed alpha
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There are 8 sheets in PDB entry 8J3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
200 208anti-parallel
Strand 4
A
2 12anti-parallel
Strand 5
A
163 167anti-parallel
Strand 6
A
142 146anti-parallel
Strand 7
A
132 136anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
200 208anti-parallel
Strand 4
A
186 187anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
320 324parallel
Strand 5
A
359 363parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
397 399anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
200 208anti-parallel
Strand 3
B
186 195anti-parallel
Strand 4
B
125 128anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
163 167anti-parallel
Strand 3
B
142 146anti-parallel
Strand 4
B
132 136anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 245first strand
Strand 2
B
232 235anti-parallel
Strand 3
B
217 225anti-parallel
Strand 4
B
318 324parallel
Strand 5
B
359 363parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
397 399anti-parallel
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