Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3S entry

There are 7 chains in PDB entry 8J3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12ALA 256
B
 THR 12ALA 256
C
 THR 12ALA 256
D
 THR 12ALA 256
E
 PHE 1PRO 12
F
 PHE 1PRO 12
G
 PHE 1PRO 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8J3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
104 110Right-handed alpha
Helix 5
AA5
A
118 128Right-handed alpha
Helix 6
AA6
A
176 182Right-handed alpha
Helix 7
AA7
A
188 201Right-handed alpha
Helix 8
AA8
A
217 231Right-handed alpha
Helix 9
AA9
A
233 245Right-handed alpha
Helix 10
AB1
B
35 45Right-handed alpha
Helix 11
AB2
B
90 102Right-handed alpha
Helix 12
AB3
B
104 110Right-handed alpha
Helix 13
AB4
B
118 128Right-handed alpha
Helix 14
AB5
B
176 182Right-handed alpha
Helix 15
AB6
B
188 200Right-handed alpha
Helix 16
AB7
B
217 230Right-handed alpha
Helix 17
AB8
B
233 245Right-handed alpha
Helix 18
AB9
C
29 33Right-handed 310
Helix 19
AC1
C
35 43Right-handed alpha
Helix 20
AC2
C
90 103Right-handed alpha
Helix 21
AC3
C
104 109Right-handed alpha
Helix 22
AC4
C
119 128Right-handed alpha
Helix 23
AC5
C
176 182Right-handed alpha
Helix 24
AC6
C
188 200Right-handed alpha
Helix 25
AC7
C
217 230Right-handed alpha
Helix 26
AC8
C
233 245Right-handed alpha
Helix 27
AC9
D
38 43Right-handed alpha
Helix 28
AD1
D
90 102Right-handed alpha
Helix 29
AD2
D
104 109Right-handed alpha
Helix 30
AD3
D
118 128Right-handed alpha
Helix 31
AD4
D
176 182Right-handed alpha
Helix 32
AD5
D
188 197Right-handed alpha
Helix 33
AD6
D
217 229Right-handed alpha
Helix 34
AD7
D
236 243Right-handed alpha
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There are 4 sheets in PDB entry 8J3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
14 22anti-parallel
Strand 3
A
81 88anti-parallel
Strand 4
A
70 77anti-parallel
Strand 5
A
58 61anti-parallel
Strand 6
A
155 161parallel
Strand 7
A
130 135anti-parallel
Strand 8
E
2 3anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
157 161anti-parallel
Strand 3
B
58 61parallel
Strand 4
B
64 77anti-parallel
Strand 5
B
81 88anti-parallel
Strand 6
B
14 22anti-parallel
Strand 7
B
172 174anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 133first strand
Strand 2
C
158 161anti-parallel
Strand 3
C
58 61parallel
Strand 4
C
68 77anti-parallel
Strand 5
C
81 88anti-parallel
Strand 6
C
14 22anti-parallel
Strand 7
C
172 174anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 133first strand
Strand 2
D
158 160anti-parallel
Strand 3
D
58 61parallel
Strand 4
D
68 78anti-parallel
Strand 5
D
81 88anti-parallel
Strand 6
D
14 21anti-parallel
Strand 7
D
172 174anti-parallel
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