Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3T entry

There are 2 chains in PDB entry 8J3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12ALA 256
B
 THR 12ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8J3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
104 110Right-handed alpha
Helix 5
AA5
A
118 128Right-handed alpha
Helix 6
AA6
A
176 183Right-handed alpha
Helix 7
AA7
A
188 197Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
233 246Right-handed alpha
Helix 10
AB1
B
37 42Right-handed alpha
Helix 11
AB2
B
90 102Right-handed alpha
Helix 12
AB3
B
104 109Right-handed alpha
Helix 13
AB4
B
118 128Right-handed alpha
Helix 14
AB5
B
176 182Right-handed alpha
Helix 15
AB6
B
188 200Right-handed alpha
Helix 16
AB7
B
217 229Right-handed alpha
Helix 17
AB8
B
233 246Right-handed alpha
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There are 2 sheets in PDB entry 8J3T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
155 161anti-parallel
Strand 3
A
58 61parallel
Strand 4
A
64 77anti-parallel
Strand 5
A
81 88anti-parallel
Strand 6
A
14 22anti-parallel
Strand 7
A
171 174anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
158 161anti-parallel
Strand 3
B
58 61parallel
Strand 4
B
68 78anti-parallel
Strand 5
B
81 88anti-parallel
Strand 6
B
14 22anti-parallel
Strand 7
B
172 174anti-parallel
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