Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3W entry

There is 1 chain in PDB entry 8J3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9PRO 1298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8J3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
27 37Right-handed alpha
Helix 4
AA4
A
40 44Right-handed 310
Helix 5
AA5
A
48 51Right-handed 310
Helix 6
AA6
A
52 75Right-handed alpha
Helix 7
AA7
A
79 88Right-handed alpha
Helix 8
AA8
A
89 122Right-handed alpha
Helix 9
AA9
A
127 150Right-handed alpha
Helix 10
AB1
A
151 181Right-handed alpha
Helix 11
AB2
A
182 187Right-handed alpha
Helix 12
AB3
A
190 200Right-handed alpha
Helix 13
AB4
A
204 212Right-handed alpha
Helix 14
AB5
A
213 234Right-handed alpha
Helix 15
AB6
A
236 282Right-handed alpha
Helix 16
AB7
A
282 290Right-handed alpha
Helix 17
AB8
A
291 337Right-handed alpha
Helix 18
AB9
A
347 367Right-handed alpha
Helix 19
AC1
A
368 392Right-handed alpha
Helix 20
AC2
A
450 459Right-handed alpha
Helix 21
AC3
A
488 495Right-handed alpha
Helix 22
AC4
A
500 511Right-handed alpha
Helix 23
AC5
A
512 520Right-handed alpha
Helix 24
AC6
A
522 526Right-handed 310
Helix 25
AC7
A
529 533Right-handed 310
Helix 26
AC8
A
536 552Right-handed alpha
Helix 27
AC9
A
561 565Right-handed 310
Helix 28
AD1
A
566 577Right-handed alpha
Helix 29
AD2
A
593 600Right-handed 310
Helix 30
AD3
A
616 623Right-handed alpha
Helix 31
AD4
A
626 632Right-handed alpha
Helix 32
AD5
A
698 709Right-handed alpha
Helix 33
AD6
A
710 744Right-handed alpha
Helix 34
AD7
A
760 807Right-handed alpha
Helix 35
AD8
A
809 815Right-handed alpha
Helix 36
AD9
A
817 834Right-handed alpha
Helix 37
AE1
A
834 861Right-handed alpha
Helix 38
AE2
A
864 886Right-handed alpha
Helix 39
AE3
A
891 896Right-handed alpha
Helix 40
AE4
A
897 910Right-handed alpha
Helix 41
AE5
A
910 917Right-handed alpha
Helix 42
AE6
A
921 969Right-handed alpha
Helix 43
AE7
A
975 1018Right-handed alpha
Helix 44
AE8
A
1080 1089Right-handed alpha
Helix 45
AE9
A
1109 1115Right-handed alpha
Helix 46
AF1
A
1130 1136Right-handed alpha
Helix 47
AF2
A
1142 1153Right-handed alpha
Helix 48
AF3
A
1155 1161Right-handed alpha
Helix 49
AF4
A
1171 1175Right-handed 310
Helix 50
AF5
A
1178 1194Right-handed alpha
Helix 51
AF6
A
1208 1223Right-handed alpha
Helix 52
AF7
A
1224 1226Right-handed 310
Helix 53
AF8
A
1234 1239Right-handed 310
Helix 54
AF9
A
1257 1264Right-handed alpha
Helix 55
AG1
A
1267 1276Right-handed alpha
Helix 56
AG2
A
1277 1297Right-handed alpha
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There are 4 sheets in PDB entry 8J3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 435first strand
Strand 2
A
409 416anti-parallel
Strand 3
A
466 472anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
555 559parallel
Strand 3
A
586 590parallel
Strand 4
A
440 444parallel
Strand 5
A
602 607parallel
Strand 6
A
610 615anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1056 1065first strand
Strand 2
A
1041 1049anti-parallel
Strand 3
A
1097 1100anti-parallel
Strand 4
A
1103 1104anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1118 1120first strand
Strand 2
A
1197 1201parallel
Strand 3
A
1227 1231parallel
Strand 4
A
1070 1074parallel
Strand 5
A
1243 1248parallel
Strand 6
A
1251 1256anti-parallel
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