Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J3Y entry

There are 2 chains in PDB entry 8J3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 82	ASN 473
B	HIS 82	ASN 473

There are 24 helices in PDB entry 8J3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	108	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	128	133	Right-handed 310
Helix 4	AA4	A	146	157	Right-handed alpha
Helix 5	AA5	A	178	185	Right-handed alpha
Helix 6	AA6	A	185	197	Right-handed alpha
Helix 7	AA7	A	222	234	Right-handed alpha
Helix 8	AA8	A	250	261	Right-handed alpha
Helix 9	AA9	A	262	265	Right-handed 310
Helix 10	AB1	A	283	301	Right-handed alpha
Helix 11	AB2	A	334	343	Right-handed alpha
Helix 12	AB3	A	359	361	Right-handed 310
Helix 13	AB4	B	100	108	Right-handed alpha
Helix 14	AB5	B	122	126	Right-handed 310
Helix 15	AB6	B	128	133	Right-handed 310
Helix 16	AB7	B	146	157	Right-handed alpha
Helix 17	AB8	B	178	185	Right-handed alpha
Helix 18	AB9	B	185	197	Right-handed alpha
Helix 19	AC1	B	222	234	Right-handed alpha
Helix 20	AC2	B	250	261	Right-handed alpha
Helix 21	AC3	B	262	265	Right-handed 310
Helix 22	AC4	B	283	301	Right-handed alpha
Helix 23	AC5	B	334	343	Right-handed alpha
Helix 24	AC6	B	359	361	Right-handed 310

There are 11 sheets in PDB entry 8J3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	113	115	parallel
Strand 3	A	92	95	parallel
Strand 4	A	304	310	parallel
Strand 5	A	268	273	parallel
Strand 6	A	242	246	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	199	201	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	388	395	parallel
Strand 3	A	363	365	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	388	395	parallel
Strand 3	A	451	459	anti-parallel
Strand 4	A	413	419	anti-parallel
Strand 5	A	422	430	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	464	472	anti-parallel
Strand 3	A	399	408	anti-parallel
Strand 4	A	439	442	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	371	first strand
Strand 2	A	379	383	anti-parallel
Strand 3	A	464	472	anti-parallel
Strand 4	A	399	408	anti-parallel
Strand 5	A	446	448	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	136	first strand
Strand 2	B	113	115	parallel
Strand 3	B	92	95	parallel
Strand 4	B	304	310	parallel
Strand 5	B	268	273	parallel
Strand 6	B	242	246	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	199	201	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	464	472	anti-parallel
Strand 3	B	399	408	anti-parallel
Strand 4	B	439	442	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	464	472	anti-parallel
Strand 4	B	399	408	anti-parallel
Strand 5	B	446	448	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	388	395	anti-parallel
Strand 3	B	451	460	anti-parallel
Strand 4	B	413	419	anti-parallel
Strand 5	B	422	430	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3Y