Analysis of interatomic Contacts of Structural Units in PDB entry:
8J3Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J3Z entry

There is 1 chain in PDB entry 8J3Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9PRO 1298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8J3Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
17 23Right-handed alpha
Helix 3
AA3
A
24 26Right-handed 310
Helix 4
AA4
A
27 37Right-handed alpha
Helix 5
AA5
A
52 72Right-handed alpha
Helix 6
AA6
A
80 84Right-handed 310
Helix 7
AA7
A
95 103Right-handed alpha
Helix 8
AA8
A
107 123Right-handed alpha
Helix 9
AA9
A
127 147Right-handed alpha
Helix 10
AB1
A
152 179Right-handed alpha
Helix 11
AB2
A
182 189Right-handed alpha
Helix 12
AB3
A
190 201Right-handed alpha
Helix 13
AB4
A
202 207Right-handed 310
Helix 14
AB5
A
213 234Right-handed alpha
Helix 15
AB6
A
235 246Right-handed alpha
Helix 16
AB7
A
246 251Right-handed alpha
Helix 17
AB8
A
256 282Right-handed alpha
Helix 18
AB9
A
282 290Right-handed alpha
Helix 19
AC1
A
291 296Right-handed alpha
Helix 20
AC2
A
317 326Right-handed alpha
Helix 21
AC3
A
326 342Right-handed alpha
Helix 22
AC4
A
349 367Right-handed alpha
Helix 23
AC5
A
367 391Right-handed alpha
Helix 24
AC6
A
450 460Right-handed alpha
Helix 25
AC7
A
489 495Right-handed alpha
Helix 26
AC8
A
500 511Right-handed alpha
Helix 27
AC9
A
513 519Right-handed alpha
Helix 28
AD1
A
522 525Right-handed 310
Helix 29
AD2
A
529 533Right-handed 310
Helix 30
AD3
A
536 551Right-handed alpha
Helix 31
AD4
A
566 577Right-handed alpha
Helix 32
AD5
A
580 584Right-handed 310
Helix 33
AD6
A
593 600Right-handed 310
Helix 34
AD7
A
616 623Right-handed alpha
Helix 35
AD8
A
626 632Right-handed alpha
Helix 36
AD9
A
698 706Right-handed alpha
Helix 37
AE1
A
710 744Right-handed alpha
Helix 38
AE2
A
760 792Right-handed alpha
Helix 39
AE3
A
796 806Right-handed alpha
Helix 40
AE4
A
810 816Right-handed alpha
Helix 41
AE5
A
817 835Right-handed alpha
Helix 42
AE6
A
835 861Right-handed alpha
Helix 43
AE7
A
862 866Right-handed 310
Helix 44
AE8
A
867 910Right-handed alpha
Helix 45
AE9
A
910 917Right-handed alpha
Helix 46
AF1
A
919 966Right-handed alpha
Helix 47
AF2
A
970 974Right-handed 310
Helix 48
AF3
A
975 990Right-handed alpha
Helix 49
AF4
A
993 998Right-handed alpha
Helix 50
AF5
A
999 1007Right-handed alpha
Helix 51
AF6
A
1007 1016Right-handed alpha
Helix 52
AF7
A
1080 1089Right-handed alpha
Helix 53
AF8
A
1106 1108Right-handed 310
Helix 54
AF9
A
1109 1115Right-handed alpha
Helix 55
AG1
A
1130 1136Right-handed alpha
Helix 56
AG2
A
1142 1153Right-handed alpha
Helix 57
AG3
A
1155 1161Right-handed alpha
Helix 58
AG4
A
1181 1194Right-handed alpha
Helix 59
AG5
A
1210 1223Right-handed alpha
Helix 60
AG6
A
1234 1239Right-handed 310
Helix 61
AG7
A
1257 1264Right-handed alpha
Helix 62
AG8
A
1267 1275Right-handed alpha
Helix 63
AG9
A
1277 1297Right-handed alpha
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There are 5 sheets in PDB entry 8J3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 435first strand
Strand 2
A
410 417anti-parallel
Strand 3
A
464 471anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
555 559parallel
Strand 3
A
586 590parallel
Strand 4
A
440 444parallel
Strand 5
A
602 606parallel
Strand 6
A
611 615anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
527 528anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1056 1065first strand
Strand 2
A
1041 1049anti-parallel
Strand 3
A
1095 1100anti-parallel
Strand 4
A
1103 1104anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1118 1120first strand
Strand 2
A
1197 1201parallel
Strand 3
A
1227 1231parallel
Strand 4
A
1071 1074parallel
Strand 5
A
1243 1248parallel
Strand 6
A
1251 1256anti-parallel
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