Analysis of interatomic Contacts of Structural Units in PDB entry:
8J46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J46 entry

There is 1 chain in PDB entry 8J46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11TYR 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8J46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 52Right-handed alpha
Helix 2
AA2
A
59 77Right-handed alpha
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
96 130Right-handed alpha
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
139 159Right-handed alpha
Helix 7
AA7
A
159 168Right-handed alpha
Helix 8
AA8
A
182 188Right-handed alpha
Helix 9
AA9
A
196 209Right-handed alpha
Helix 10
AB1
A
209 1019Right-handed alpha
Helix 11
AB2
A
1022 1044Right-handed alpha
Helix 12
AB3
A
1062 1081Right-handed alpha
Helix 13
AB4
A
1083 242Right-handed alpha
Helix 14
AB5
A
243 264Right-handed alpha
Helix 15
AB6
A
271 294Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8J46.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
175 176parallel
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