Analysis of interatomic Contacts of Structural Units in PDB entry:
8J48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J48 entry

There are 4 chains in PDB entry 8J48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ARG 152GLU 187
B
 ALA 33LYS 135
A
 ARG 152ARG 189
C
 GLU 37LYS 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8J48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
176 186Right-handed alpha
Helix 2
AA2
B
51 57Right-handed alpha
Helix 3
AA3
B
61 65Right-handed 310
Helix 4
AA4
B
112 117Right-handed alpha
Helix 5
AA5
A
176 187Right-handed alpha
Helix 6
AA6
C
51 58Right-handed 310
Helix 7
AA7
C
60 64Right-handed 310
Helix 8
AA8
C
112 117Right-handed alpha
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There are 4 sheets in PDB entry 8J48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 168first strand
Strand 2
D
171 175anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
125 131parallel
Strand 4
B
94 99anti-parallel
Strand 5
B
73 75parallel
Strand 6
B
83 86anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
171 175anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
42 49anti-parallel
Strand 3
C
125 131parallel
Strand 4
C
94 99anti-parallel
Strand 5
C
73 74parallel
Strand 6
C
85 86anti-parallel
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