Analysis of interatomic Contacts of Structural Units in PDB entry:
8J4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J4B entry

There are 4 chains in PDB entry 8J4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37LYS 135
C
 GLY 32LYS 135
B
 PRO 99ARG 162
D
 MET 98ARG 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 8J4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 58Right-handed 310
Helix 2
AA2
A
60 64Right-handed 310
Helix 3
AA3
A
112 117Right-handed alpha
Helix 4
AA4
C
51 56Right-handed alpha
Helix 5
AA5
C
61 65Right-handed 310
Helix 6
AA6
C
112 117Right-handed alpha
Helix 7
AA7
B
109 113Right-handed 310
Helix 8
AA8
B
114 120Right-handed alpha
Helix 9
AA9
B
152 154Right-handed 310
Helix 10
AB1
D
114 121Right-handed alpha
Helix 11
AB2
D
152 154Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8J4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
125 131parallel
Strand 4
A
94 99anti-parallel
Strand 5
A
73 75parallel
Strand 6
A
83 86anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
42 49anti-parallel
Strand 3
C
125 131parallel
Strand 4
C
94 99anti-parallel
Strand 5
C
73 75parallel
Strand 6
C
83 86anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
137 142anti-parallel
Strand 3
B
147 150anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 134first strand
Strand 2
D
137 142anti-parallel
Strand 3
D
147 150anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il